Strain Fitness in Shewanella sp. ANA-3 around Shewana3_2663

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nttig and Shewana3_R0112 are separated by 261 nucleotidesShewana3_R0112 and Shewana3_R0113 are separated by 9 nucleotidesShewana3_R0113 and Shewana3_R0114 are separated by 109 nucleotidesShewana3_R0114 and Shewana3_2663 are separated by 261 nucleotidesShewana3_2663 and cysS are separated by 224 nucleotides Shewana3_2662: tig - trigger factor (RefSeq), at 3,177,544 to 3,178,848 tig Shewana3_R0112: Shewana3_R0112 - tRNA-His (RefSeq), at 3,179,110 to 3,179,185 _R0112 Shewana3_R0113: Shewana3_R0113 - tRNA-Arg (RefSeq), at 3,179,195 to 3,179,271 _R0113 Shewana3_R0114: Shewana3_R0114 - tRNA-Pro (RefSeq), at 3,179,381 to 3,179,457 _R0114 Shewana3_2663: Shewana3_2663 - methenyltetrahydrofolate cyclohydrolase (RefSeq), at 3,179,719 to 3,180,573 _2663 Shewana3_2664: cysS - cysteinyl-tRNA synthetase (RefSeq), at 3,180,798 to 3,182,183 cysS Position (kb) 3179 3180 3181Strain fitness (log2 ratio) -1 0 1at 3178.901 kb on + strandat 3179.044 kb on + strandat 3180.554 kb on - strandat 3180.638 kb on + strandat 3180.676 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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3,178,901 + +0.7
3,179,044 + -0.2
3,180,554 - +1.1
3,180,638 + +0.3
3,180,676 - +0.7

Or see this region's nucleotide sequence