Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1980

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrpsA and ihfB are separated by 73 nucleotidesihfB and Shewana3_1979 are separated by 123 nucleotidesShewana3_1979 and Shewana3_1980 are separated by 1 nucleotidesShewana3_1980 and Shewana3_1981 are separated by 42 nucleotidesShewana3_1981 and Shewana3_1982 are separated by 72 nucleotides Shewana3_1977: rpsA - 30S ribosomal protein S1 (RefSeq), at 2,355,897 to 2,357,564 rpsA Shewana3_1978: ihfB - integration host factor subunit beta (RefSeq), at 2,357,638 to 2,357,925 ihfB Shewana3_1979: Shewana3_1979 - hypothetical protein (RefSeq), at 2,358,049 to 2,358,324 _1979 Shewana3_1980: Shewana3_1980 - tetratricopeptide repeat protein (RefSeq), at 2,358,326 to 2,359,486 _1980 Shewana3_1981: Shewana3_1981 - orotidine 5'-phosphate decarboxylase (RefSeq), at 2,359,529 to 2,360,224 _1981 Shewana3_1982: Shewana3_1982 - short chain dehydrogenase (RefSeq), at 2,360,297 to 2,361,124 _1982 Position (kb) 2358 2359 2360Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2359.707 kb on + strand, within Shewana3_1981at 2360.093 kb on + strand, within Shewana3_1981at 2360.475 kb on - strand, within Shewana3_1982

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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2,359,707 + Shewana3_1981 0.26 -4.6
2,360,093 + Shewana3_1981 0.81 -4.9
2,360,475 - Shewana3_1982 0.21 +0.0

Or see this region's nucleotide sequence