Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1956

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1954 and ruvC are separated by 241 nucleotidesruvC and ruvA overlap by 4 nucleotidesruvA and ruvB are separated by 120 nucleotides Shewana3_1954: Shewana3_1954 - hypothetical protein (RefSeq), at 2,326,104 to 2,326,850 _1954 Shewana3_1955: ruvC - Holliday junction resolvase (RefSeq), at 2,327,092 to 2,327,613 ruvC Shewana3_1956: ruvA - Holliday junction DNA helicase RuvA (RefSeq), at 2,327,610 to 2,328,227 ruvA Shewana3_1957: ruvB - Holliday junction DNA helicase RuvB (RefSeq), at 2,328,348 to 2,329,352 ruvB Position (kb) 2327 2328 2329Strain fitness (log2 ratio) -2 -1 0 1at 2327.035 kb on + strandat 2327.606 kb on + strandat 2327.748 kb on + strand, within ruvAat 2327.758 kb on + strand, within ruvAat 2327.848 kb on - strand, within ruvAat 2327.865 kb on + strand, within ruvAat 2328.507 kb on + strand, within ruvBat 2328.807 kb on + strand, within ruvB

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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2,327,035 + -1.2
2,327,606 + -0.3
2,327,748 + ruvA Shewana3_1956 0.22 -2.2
2,327,758 + ruvA Shewana3_1956 0.24 -0.4
2,327,848 - ruvA Shewana3_1956 0.39 -0.7
2,327,865 + ruvA Shewana3_1956 0.41 -2.1
2,328,507 + ruvB Shewana3_1957 0.16 -1.9
2,328,807 + ruvB Shewana3_1957 0.46 +0.4

Or see this region's nucleotide sequence