Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1442

Experiment: succinate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShewana3_1441 and Shewana3_1442 are separated by 86 nucleotidesShewana3_1442 and Shewana3_1443 are separated by 40 nucleotides Shewana3_1441: Shewana3_1441 - siroheme synthase (RefSeq), at 1,669,846 to 1,670,757 _1441 Shewana3_1442: Shewana3_1442 - YaeQ family protein (RefSeq), at 1,670,844 to 1,671,389 _1442 Shewana3_1443: Shewana3_1443 - peptidase S8 and S53, subtilisin, kexin, sedolisin (RefSeq), at 1,671,430 to 1,673,859 _1443 Position (kb) 1670 1671 1672Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 1669.995 kb on + strand, within Shewana3_1441at 1670.242 kb on - strand, within Shewana3_1441at 1670.320 kb on + strand, within Shewana3_1441at 1670.360 kb on - strand, within Shewana3_1441at 1670.801 kb on - strandat 1670.847 kb on - strandat 1671.275 kb on - strand, within Shewana3_1442at 1671.539 kb on + strandat 1671.661 kb on - strandat 1671.712 kb on + strand, within Shewana3_1443at 1671.712 kb on + strand, within Shewana3_1443at 1671.796 kb on + strand, within Shewana3_1443at 1671.804 kb on - strand, within Shewana3_1443at 1671.804 kb on - strand, within Shewana3_1443at 1671.830 kb on - strand, within Shewana3_1443at 1671.961 kb on + strand, within Shewana3_1443

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
remove
1,669,995 + Shewana3_1441 0.16 -2.5
1,670,242 - Shewana3_1441 0.43 -3.6
1,670,320 + Shewana3_1441 0.52 -6.3
1,670,360 - Shewana3_1441 0.56 -5.9
1,670,801 - +0.3
1,670,847 - -0.3
1,671,275 - Shewana3_1442 0.79 -0.6
1,671,539 + -3.2
1,671,661 - +0.3
1,671,712 + Shewana3_1443 0.12 +0.1
1,671,712 + Shewana3_1443 0.12 +1.2
1,671,796 + Shewana3_1443 0.15 -0.6
1,671,804 - Shewana3_1443 0.15 +0.8
1,671,804 - Shewana3_1443 0.15 -1.5
1,671,830 - Shewana3_1443 0.16 -0.2
1,671,961 + Shewana3_1443 0.22 +0.6

Or see this region's nucleotide sequence