Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0966

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0964 and Shewana3_0965 are separated by 192 nucleotidesShewana3_0965 and Shewana3_0966 are separated by 72 nucleotidesShewana3_0966 and Shewana3_0967 are separated by 168 nucleotides Shewana3_0964: Shewana3_0964 - peptidase M48, Ste24p (RefSeq), at 1,131,543 to 1,132,352 _0964 Shewana3_0965: Shewana3_0965 - peptidylprolyl isomerase, FKBP-type (RefSeq), at 1,132,545 to 1,133,162 _0965 Shewana3_0966: Shewana3_0966 - dihydrodipicolinate reductase (RefSeq), at 1,133,235 to 1,134,047 _0966 Shewana3_0967: Shewana3_0967 - carbamoyl phosphate synthase small subunit (RefSeq), at 1,134,216 to 1,135,376 _0967 Position (kb) 1133 1134 1135Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 1132.745 kb on + strand, within Shewana3_0965at 1132.760 kb on + strand, within Shewana3_0965at 1132.827 kb on + strand, within Shewana3_0965at 1132.955 kb on - strand, within Shewana3_0965at 1132.957 kb on + strand, within Shewana3_0965at 1133.049 kb on + strand, within Shewana3_0965at 1133.218 kb on + strandat 1134.666 kb on + strand, within Shewana3_0967at 1134.674 kb on + strand, within Shewana3_0967at 1134.674 kb on - strand, within Shewana3_0967at 1134.681 kb on + strand, within Shewana3_0967at 1134.792 kb on + strand, within Shewana3_0967at 1134.911 kb on - strand, within Shewana3_0967at 1134.966 kb on - strand, within Shewana3_0967at 1135.046 kb on - strand, within Shewana3_0967

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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1,132,745 + Shewana3_0965 0.32 +0.3
1,132,760 + Shewana3_0965 0.35 -0.0
1,132,827 + Shewana3_0965 0.46 +0.3
1,132,955 - Shewana3_0965 0.66 -2.3
1,132,957 + Shewana3_0965 0.67 +0.6
1,133,049 + Shewana3_0965 0.82 +0.3
1,133,218 + +0.2
1,134,666 + Shewana3_0967 0.39 -6.6
1,134,674 + Shewana3_0967 0.39 -5.6
1,134,674 - Shewana3_0967 0.39 -5.4
1,134,681 + Shewana3_0967 0.40 -3.8
1,134,792 + Shewana3_0967 0.50 -6.0
1,134,911 - Shewana3_0967 0.60 -3.2
1,134,966 - Shewana3_0967 0.65 -6.3
1,135,046 - Shewana3_0967 0.71 -4.3

Or see this region's nucleotide sequence