Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0841

Experiment: succinate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0840 and Shewana3_0841 are separated by 3 nucleotidesShewana3_0841 and Shewana3_0842 overlap by 4 nucleotides Shewana3_0840: Shewana3_0840 - hypothetical protein (RefSeq), at 972,865 to 973,701 _0840 Shewana3_0841: Shewana3_0841 - peptidase M16 domain-containing protein (RefSeq), at 973,705 to 975,243 _0841 Shewana3_0842: Shewana3_0842 - peptidase M16 domain-containing protein (RefSeq), at 975,240 to 976,655 _0842 Position (kb) 973 974 975 976Strain fitness (log2 ratio) -2 -1 0 1 2at 972.707 kb on - strandat 972.707 kb on - strandat 972.854 kb on + strandat 972.862 kb on - strandat 972.998 kb on - strand, within Shewana3_0840at 973.014 kb on + strand, within Shewana3_0840at 973.015 kb on + strand, within Shewana3_0840at 973.258 kb on + strand, within Shewana3_0840at 973.263 kb on + strand, within Shewana3_0840at 973.263 kb on + strand, within Shewana3_0840at 973.388 kb on + strand, within Shewana3_0840at 973.435 kb on + strand, within Shewana3_0840at 973.443 kb on - strand, within Shewana3_0840at 973.499 kb on - strand, within Shewana3_0840at 973.499 kb on - strand, within Shewana3_0840at 973.499 kb on - strand, within Shewana3_0840at 973.832 kb on - strandat 973.855 kb on + strandat 973.938 kb on + strand, within Shewana3_0841at 973.990 kb on - strand, within Shewana3_0841at 974.055 kb on + strand, within Shewana3_0841at 974.098 kb on - strand, within Shewana3_0841at 974.250 kb on - strand, within Shewana3_0841at 974.406 kb on - strand, within Shewana3_0841at 974.424 kb on + strand, within Shewana3_0841at 974.439 kb on - strand, within Shewana3_0841at 974.503 kb on - strand, within Shewana3_0841at 974.556 kb on - strand, within Shewana3_0841at 974.556 kb on - strand, within Shewana3_0841at 974.556 kb on - strand, within Shewana3_0841at 974.556 kb on - strand, within Shewana3_0841at 974.577 kb on + strand, within Shewana3_0841at 974.594 kb on + strand, within Shewana3_0841at 974.618 kb on + strand, within Shewana3_0841at 974.803 kb on + strand, within Shewana3_0841at 974.803 kb on + strand, within Shewana3_0841at 974.803 kb on + strand, within Shewana3_0841at 974.806 kb on - strand, within Shewana3_0841at 974.811 kb on - strand, within Shewana3_0841at 974.812 kb on + strand, within Shewana3_0841at 974.940 kb on + strand, within Shewana3_0841at 974.948 kb on + strand, within Shewana3_0841at 974.958 kb on + strand, within Shewana3_0841at 974.966 kb on - strand, within Shewana3_0841at 974.973 kb on + strand, within Shewana3_0841at 975.005 kb on - strand, within Shewana3_0841at 975.165 kb on + strandat 975.262 kb on - strandat 975.319 kb on - strandat 975.332 kb on + strandat 975.337 kb on + strandat 975.340 kb on - strandat 975.345 kb on - strandat 975.385 kb on - strand, within Shewana3_0842at 975.400 kb on + strand, within Shewana3_0842at 975.408 kb on - strand, within Shewana3_0842at 975.539 kb on + strand, within Shewana3_0842at 975.547 kb on - strand, within Shewana3_0842at 975.859 kb on - strand, within Shewana3_0842at 975.898 kb on + strand, within Shewana3_0842at 975.906 kb on - strand, within Shewana3_0842at 975.908 kb on + strand, within Shewana3_0842at 975.908 kb on + strand, within Shewana3_0842at 975.916 kb on - strand, within Shewana3_0842at 975.983 kb on - strand, within Shewana3_0842at 976.057 kb on - strand, within Shewana3_0842at 976.096 kb on + strand, within Shewana3_0842at 976.096 kb on + strand, within Shewana3_0842at 976.096 kb on + strand, within Shewana3_0842at 976.096 kb on + strand, within Shewana3_0842at 976.096 kb on + strand, within Shewana3_0842at 976.096 kb on + strand, within Shewana3_0842at 976.096 kb on + strand, within Shewana3_0842at 976.104 kb on - strand, within Shewana3_0842at 976.104 kb on - strand, within Shewana3_0842at 976.104 kb on - strand, within Shewana3_0842at 976.104 kb on - strand, within Shewana3_0842at 976.222 kb on - strand, within Shewana3_0842

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C)
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972,707 - +0.4
972,707 - +0.4
972,854 + -0.9
972,862 - +1.3
972,998 - Shewana3_0840 0.16 +0.6
973,014 + Shewana3_0840 0.18 -1.6
973,015 + Shewana3_0840 0.18 +0.8
973,258 + Shewana3_0840 0.47 -1.1
973,263 + Shewana3_0840 0.48 -0.4
973,263 + Shewana3_0840 0.48 +0.7
973,388 + Shewana3_0840 0.62 +0.2
973,435 + Shewana3_0840 0.68 -0.9
973,443 - Shewana3_0840 0.69 +0.9
973,499 - Shewana3_0840 0.76 +0.7
973,499 - Shewana3_0840 0.76 +0.4
973,499 - Shewana3_0840 0.76 -0.2
973,832 - +0.6
973,855 + +0.1
973,938 + Shewana3_0841 0.15 -0.2
973,990 - Shewana3_0841 0.19 +0.4
974,055 + Shewana3_0841 0.23 -1.3
974,098 - Shewana3_0841 0.26 -1.2
974,250 - Shewana3_0841 0.35 +0.0
974,406 - Shewana3_0841 0.46 -1.2
974,424 + Shewana3_0841 0.47 +0.4
974,439 - Shewana3_0841 0.48 +0.5
974,503 - Shewana3_0841 0.52 +0.3
974,556 - Shewana3_0841 0.55 -0.1
974,556 - Shewana3_0841 0.55 +0.7
974,556 - Shewana3_0841 0.55 +0.6
974,556 - Shewana3_0841 0.55 -0.1
974,577 + Shewana3_0841 0.57 -0.2
974,594 + Shewana3_0841 0.58 -1.7
974,618 + Shewana3_0841 0.59 +0.3
974,803 + Shewana3_0841 0.71 -0.6
974,803 + Shewana3_0841 0.71 -1.0
974,803 + Shewana3_0841 0.71 +0.3
974,806 - Shewana3_0841 0.72 -1.3
974,811 - Shewana3_0841 0.72 -0.8
974,812 + Shewana3_0841 0.72 +0.6
974,940 + Shewana3_0841 0.80 +0.8
974,948 + Shewana3_0841 0.81 +0.6
974,958 + Shewana3_0841 0.81 +0.7
974,966 - Shewana3_0841 0.82 +0.0
974,973 + Shewana3_0841 0.82 -0.3
975,005 - Shewana3_0841 0.84 -1.9
975,165 + +0.9
975,262 - +0.3
975,319 - -0.9
975,332 + +0.2
975,337 + -0.8
975,340 - -0.6
975,345 - -0.9
975,385 - Shewana3_0842 0.10 -0.9
975,400 + Shewana3_0842 0.11 -0.1
975,408 - Shewana3_0842 0.12 +0.5
975,539 + Shewana3_0842 0.21 -0.1
975,547 - Shewana3_0842 0.22 +0.2
975,859 - Shewana3_0842 0.44 +0.6
975,898 + Shewana3_0842 0.46 +0.8
975,906 - Shewana3_0842 0.47 +2.5
975,908 + Shewana3_0842 0.47 -0.2
975,908 + Shewana3_0842 0.47 -0.7
975,916 - Shewana3_0842 0.48 -0.7
975,983 - Shewana3_0842 0.52 +0.8
976,057 - Shewana3_0842 0.58 -1.3
976,096 + Shewana3_0842 0.60 +0.5
976,096 + Shewana3_0842 0.60 -1.5
976,096 + Shewana3_0842 0.60 +0.3
976,096 + Shewana3_0842 0.60 +0.5
976,096 + Shewana3_0842 0.60 +0.6
976,096 + Shewana3_0842 0.60 -0.1
976,096 + Shewana3_0842 0.60 -0.8
976,104 - Shewana3_0842 0.61 -1.8
976,104 - Shewana3_0842 0.61 +0.4
976,104 - Shewana3_0842 0.61 -1.6
976,104 - Shewana3_0842 0.61 +0.2
976,222 - Shewana3_0842 0.69 +0.1

Or see this region's nucleotide sequence