Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0591 and Shewana3_0592 are separated by 244 nucleotides Shewana3_0592 and Shewana3_0593 are separated by 79 nucleotides Shewana3_0593 and Shewana3_0594 are separated by 8 nucleotides
Shewana3_0591: Shewana3_0591 - hypothetical protein (RefSeq), at 693,763 to 694,218
_0591
Shewana3_0592: Shewana3_0592 - carbohydrate kinase, YjeF related protein (RefSeq), at 694,463 to 695,962
_0592
Shewana3_0593: Shewana3_0593 - hypothetical protein (RefSeq), at 696,042 to 696,500
_0593
Shewana3_0594: Shewana3_0594 - cell wall hydrolase/autolysin (RefSeq), at 696,509 to 697,900
_0594
Position (kb) 694
695
696 Strain fitness (log2 ratio) -1
0
1
2 at 693.522 kb on + strand at 693.734 kb on + strand at 693.741 kb on + strand at 693.741 kb on + strand at 693.741 kb on + strand at 693.746 kb on + strand at 693.749 kb on - strand at 693.823 kb on + strand, within Shewana3_0591 at 694.021 kb on - strand, within Shewana3_0591 at 694.180 kb on + strand at 694.180 kb on + strand at 694.237 kb on + strand at 694.252 kb on + strand at 694.317 kb on + strand at 694.422 kb on - strand at 694.610 kb on - strand at 694.759 kb on - strand, within Shewana3_0592 at 694.768 kb on + strand, within Shewana3_0592 at 694.799 kb on - strand, within Shewana3_0592 at 694.946 kb on - strand, within Shewana3_0592 at 694.961 kb on - strand, within Shewana3_0592 at 694.961 kb on - strand, within Shewana3_0592 at 695.217 kb on + strand, within Shewana3_0592 at 695.280 kb on + strand, within Shewana3_0592 at 695.314 kb on + strand, within Shewana3_0592 at 695.381 kb on - strand, within Shewana3_0592 at 695.473 kb on + strand, within Shewana3_0592 at 695.509 kb on + strand, within Shewana3_0592
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 693,522 + +0.6 693,734 + +0.9 693,741 + +0.5 693,741 + +0.3 693,741 + +0.6 693,746 + -1.1 693,749 - -1.1 693,823 + Shewana3_0591 0.13 +0.4 694,021 - Shewana3_0591 0.57 +1.0 694,180 + +0.4 694,180 + +2.4 694,237 + -0.5 694,252 + +0.2 694,317 + +0.6 694,422 - +0.4 694,610 - +0.1 694,759 - Shewana3_0592 0.20 +0.7 694,768 + Shewana3_0592 0.20 +0.3 694,799 - Shewana3_0592 0.22 -1.2 694,946 - Shewana3_0592 0.32 +0.3 694,961 - Shewana3_0592 0.33 +0.1 694,961 - Shewana3_0592 0.33 +0.9 695,217 + Shewana3_0592 0.50 +0.5 695,280 + Shewana3_0592 0.54 -1.1 695,314 + Shewana3_0592 0.57 -1.0 695,381 - Shewana3_0592 0.61 +0.4 695,473 + Shewana3_0592 0.67 -1.0 695,509 + Shewana3_0592 0.70 -1.0
Or see this region's nucleotide sequence