Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4382 and Shewana3_4383 are separated by 19 nucleotides Shewana3_4383 and Shewana3_4384 overlap by 11 nucleotides Shewana3_4384 and Shewana3_4385 are separated by 11 nucleotides
Shewana3_4382: Shewana3_4382 - hypothetical protein (RefSeq), at 268,001 to 268,531
_4382
Shewana3_4383: Shewana3_4383 - hypothetical protein (RefSeq), at 268,551 to 269,246
_4383
Shewana3_4384: Shewana3_4384 - CzcA family heavy metal efflux protein (RefSeq), at 269,236 to 272,379
_4384
Shewana3_4385: Shewana3_4385 - secretion protein HlyD (RefSeq), at 272,391 to 273,635
_4385
Position (kb) 269
270
271
272
273 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 268.319 kb on - strand, within Shewana3_4382 at 268.336 kb on + strand, within Shewana3_4382 at 268.359 kb on - strand, within Shewana3_4382 at 268.433 kb on - strand, within Shewana3_4382 at 268.567 kb on + strand at 268.595 kb on + strand at 268.595 kb on + strand at 268.595 kb on + strand at 268.595 kb on + strand at 268.595 kb on + strand at 268.595 kb on + strand at 268.603 kb on - strand at 268.613 kb on - strand at 268.689 kb on - strand, within Shewana3_4383 at 268.790 kb on + strand, within Shewana3_4383 at 268.798 kb on - strand, within Shewana3_4383 at 269.085 kb on - strand, within Shewana3_4383 at 269.226 kb on - strand at 269.391 kb on + strand at 269.399 kb on - strand at 269.463 kb on - strand at 269.477 kb on + strand at 269.550 kb on + strand at 269.740 kb on - strand, within Shewana3_4384 at 269.823 kb on - strand, within Shewana3_4384 at 270.042 kb on + strand, within Shewana3_4384 at 270.127 kb on - strand, within Shewana3_4384 at 270.158 kb on + strand, within Shewana3_4384 at 270.404 kb on - strand, within Shewana3_4384 at 270.712 kb on + strand, within Shewana3_4384 at 270.804 kb on - strand, within Shewana3_4384 at 270.804 kb on - strand, within Shewana3_4384 at 270.920 kb on - strand, within Shewana3_4384 at 271.213 kb on + strand, within Shewana3_4384 at 271.307 kb on - strand, within Shewana3_4384 at 271.326 kb on - strand, within Shewana3_4384 at 271.348 kb on - strand, within Shewana3_4384 at 271.502 kb on + strand, within Shewana3_4384 at 271.672 kb on + strand, within Shewana3_4384 at 271.752 kb on + strand, within Shewana3_4384 at 271.839 kb on + strand, within Shewana3_4384 at 271.850 kb on + strand, within Shewana3_4384 at 271.850 kb on + strand, within Shewana3_4384 at 271.858 kb on - strand, within Shewana3_4384 at 272.019 kb on + strand, within Shewana3_4384 at 272.104 kb on - strand at 272.134 kb on + strand at 272.142 kb on - strand at 272.142 kb on - strand at 272.149 kb on + strand at 272.183 kb on + strand at 272.191 kb on - strand at 272.206 kb on - strand at 272.251 kb on + strand at 272.496 kb on - strand at 272.538 kb on + strand, within Shewana3_4385 at 272.553 kb on - strand, within Shewana3_4385 at 272.633 kb on + strand, within Shewana3_4385 at 272.872 kb on + strand, within Shewana3_4385 at 273.031 kb on - strand, within Shewana3_4385
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 268,319 - Shewana3_4382 0.60 +0.8 268,336 + Shewana3_4382 0.63 -0.6 268,359 - Shewana3_4382 0.67 -0.9 268,433 - Shewana3_4382 0.81 +0.2 268,567 + +0.5 268,595 + -1.5 268,595 + -0.6 268,595 + +0.1 268,595 + -0.2 268,595 + -2.8 268,595 + -0.5 268,603 - -1.7 268,613 - +0.0 268,689 - Shewana3_4383 0.20 +0.8 268,790 + Shewana3_4383 0.34 +0.3 268,798 - Shewana3_4383 0.35 +0.2 269,085 - Shewana3_4383 0.77 +0.3 269,226 - -0.8 269,391 + -0.9 269,399 - -0.8 269,463 - +0.2 269,477 + -2.1 269,550 + +1.0 269,740 - Shewana3_4384 0.16 +0.4 269,823 - Shewana3_4384 0.19 +0.8 270,042 + Shewana3_4384 0.26 +1.0 270,127 - Shewana3_4384 0.28 +1.4 270,158 + Shewana3_4384 0.29 +0.2 270,404 - Shewana3_4384 0.37 +0.5 270,712 + Shewana3_4384 0.47 +0.0 270,804 - Shewana3_4384 0.50 -0.2 270,804 - Shewana3_4384 0.50 -0.1 270,920 - Shewana3_4384 0.54 -1.0 271,213 + Shewana3_4384 0.63 -0.6 271,307 - Shewana3_4384 0.66 -0.4 271,326 - Shewana3_4384 0.66 +1.2 271,348 - Shewana3_4384 0.67 +0.4 271,502 + Shewana3_4384 0.72 +0.1 271,672 + Shewana3_4384 0.77 +0.6 271,752 + Shewana3_4384 0.80 +1.2 271,839 + Shewana3_4384 0.83 -1.1 271,850 + Shewana3_4384 0.83 -0.0 271,850 + Shewana3_4384 0.83 -0.9 271,858 - Shewana3_4384 0.83 +0.1 272,019 + Shewana3_4384 0.89 +1.0 272,104 - -1.8 272,134 + -1.1 272,142 - -1.0 272,142 - -0.9 272,149 + +0.9 272,183 + -1.6 272,191 - +0.5 272,206 - +0.2 272,251 + -0.9 272,496 - -0.6 272,538 + Shewana3_4385 0.12 +0.3 272,553 - Shewana3_4385 0.13 +0.9 272,633 + Shewana3_4385 0.19 +0.4 272,872 + Shewana3_4385 0.39 +0.3 273,031 - Shewana3_4385 0.51 +0.2
Or see this region's nucleotide sequence