Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4299 and Shewana3_4300 are separated by 10 nucleotides Shewana3_4300 and Shewana3_4301 are separated by 95 nucleotides Shewana3_4301 and Shewana3_4302 are separated by 126 nucleotides
Shewana3_4299: Shewana3_4299 - copper/silver efflux system membrane fusion protein CusB (RefSeq), at 182,303 to 183,595
_4299
Shewana3_4300: Shewana3_4300 - CzcA family heavy metal efflux protein (RefSeq), at 183,606 to 186,752
_4300
Shewana3_4301: Shewana3_4301 - hypothetical protein (RefSeq), at 186,848 to 187,279
_4301
Shewana3_4302: Shewana3_4302 - heavy metal translocating P-type ATPase (RefSeq), at 187,406 to 189,853
_4302
Position (kb) 183
184
185
186
187 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 182.800 kb on + strand, within Shewana3_4299 at 182.877 kb on + strand, within Shewana3_4299 at 183.181 kb on - strand, within Shewana3_4299 at 183.341 kb on - strand, within Shewana3_4299 at 183.763 kb on + strand at 183.864 kb on - strand at 183.904 kb on + strand at 183.909 kb on + strand at 183.909 kb on + strand at 183.914 kb on + strand at 184.356 kb on + strand, within Shewana3_4300 at 184.371 kb on + strand, within Shewana3_4300 at 184.448 kb on + strand, within Shewana3_4300 at 184.527 kb on - strand, within Shewana3_4300 at 184.550 kb on + strand, within Shewana3_4300 at 184.668 kb on + strand, within Shewana3_4300 at 184.976 kb on - strand, within Shewana3_4300 at 185.004 kb on - strand, within Shewana3_4300 at 185.195 kb on - strand, within Shewana3_4300 at 185.199 kb on + strand, within Shewana3_4300 at 185.199 kb on + strand, within Shewana3_4300 at 185.200 kb on - strand, within Shewana3_4300 at 185.200 kb on - strand, within Shewana3_4300 at 185.207 kb on - strand, within Shewana3_4300 at 185.207 kb on - strand, within Shewana3_4300 at 185.207 kb on - strand, within Shewana3_4300 at 185.390 kb on + strand, within Shewana3_4300 at 185.438 kb on + strand, within Shewana3_4300 at 185.446 kb on - strand, within Shewana3_4300 at 185.447 kb on - strand, within Shewana3_4300 at 185.513 kb on - strand, within Shewana3_4300 at 185.585 kb on + strand, within Shewana3_4300 at 185.593 kb on - strand, within Shewana3_4300 at 185.593 kb on - strand, within Shewana3_4300 at 185.629 kb on - strand, within Shewana3_4300 at 185.650 kb on + strand, within Shewana3_4300 at 185.989 kb on + strand, within Shewana3_4300 at 185.997 kb on - strand, within Shewana3_4300 at 186.311 kb on - strand, within Shewana3_4300 at 186.337 kb on - strand, within Shewana3_4300 at 186.516 kb on - strand at 186.558 kb on + strand at 186.768 kb on + strand at 186.811 kb on - strand at 186.825 kb on + strand at 186.832 kb on + strand at 187.154 kb on + strand, within Shewana3_4301 at 187.609 kb on - strand at 187.691 kb on - strand, within Shewana3_4302 at 187.691 kb on - strand, within Shewana3_4302
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 182,800 + Shewana3_4299 0.38 +0.8 182,877 + Shewana3_4299 0.44 -0.5 183,181 - Shewana3_4299 0.68 +0.3 183,341 - Shewana3_4299 0.80 +2.0 183,763 + +0.4 183,864 - +4.4 183,904 + +0.9 183,909 + +0.2 183,909 + +0.9 183,914 + +0.2 184,356 + Shewana3_4300 0.24 -1.4 184,371 + Shewana3_4300 0.24 -0.3 184,448 + Shewana3_4300 0.27 -1.6 184,527 - Shewana3_4300 0.29 +1.0 184,550 + Shewana3_4300 0.30 -0.3 184,668 + Shewana3_4300 0.34 +0.8 184,976 - Shewana3_4300 0.44 +0.3 185,004 - Shewana3_4300 0.44 -1.3 185,195 - Shewana3_4300 0.50 -1.2 185,199 + Shewana3_4300 0.51 -0.4 185,199 + Shewana3_4300 0.51 -1.6 185,200 - Shewana3_4300 0.51 +0.7 185,200 - Shewana3_4300 0.51 -0.2 185,207 - Shewana3_4300 0.51 +0.7 185,207 - Shewana3_4300 0.51 +0.8 185,207 - Shewana3_4300 0.51 -2.1 185,390 + Shewana3_4300 0.57 +0.0 185,438 + Shewana3_4300 0.58 +1.4 185,446 - Shewana3_4300 0.58 -0.1 185,447 - Shewana3_4300 0.59 +0.9 185,513 - Shewana3_4300 0.61 +0.1 185,585 + Shewana3_4300 0.63 +0.6 185,593 - Shewana3_4300 0.63 -0.2 185,593 - Shewana3_4300 0.63 +0.8 185,629 - Shewana3_4300 0.64 +0.4 185,650 + Shewana3_4300 0.65 -0.1 185,989 + Shewana3_4300 0.76 +0.2 185,997 - Shewana3_4300 0.76 +0.8 186,311 - Shewana3_4300 0.86 -1.3 186,337 - Shewana3_4300 0.87 -1.0 186,516 - -0.9 186,558 + -1.7 186,768 + +0.1 186,811 - -0.1 186,825 + +0.4 186,832 + -0.1 187,154 + Shewana3_4301 0.71 -1.4 187,609 - +0.5 187,691 - Shewana3_4302 0.12 +0.7 187,691 - Shewana3_4302 0.12 +0.9
Or see this region's nucleotide sequence