Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_4220 and Shewana3_4221 are separated by 278 nucleotides Shewana3_4221 and Shewana3_4222 are separated by 14 nucleotides Shewana3_4222 and Shewana3_4223 are separated by 259 nucleotides
Shewana3_4220: Shewana3_4220 - hypothetical protein (RefSeq), at 92,450 to 93,277
_4220
Shewana3_4221: Shewana3_4221 - hypothetical protein (RefSeq), at 93,556 to 94,818
_4221
Shewana3_4222: Shewana3_4222 - hypothetical protein (RefSeq), at 94,833 to 95,180
_4222
Shewana3_4223: Shewana3_4223 - hypothetical protein (RefSeq), at 95,440 to 96,366
_4223
Position (kb)
93
94
95 Strain fitness (log2 ratio)
-1
0
1 at 92.571 kb on - strand, within Shewana3_4220 at 92.605 kb on - strand, within Shewana3_4220 at 92.789 kb on - strand, within Shewana3_4220 at 92.872 kb on - strand, within Shewana3_4220 at 92.887 kb on - strand, within Shewana3_4220 at 92.913 kb on + strand, within Shewana3_4220 at 93.003 kb on - strand, within Shewana3_4220 at 93.147 kb on + strand, within Shewana3_4220 at 93.506 kb on - strand at 93.640 kb on - strand at 93.661 kb on + strand at 93.664 kb on - strand at 93.928 kb on + strand, within Shewana3_4221 at 94.157 kb on - strand, within Shewana3_4221 at 94.173 kb on + strand, within Shewana3_4221 at 94.203 kb on - strand, within Shewana3_4221 at 94.492 kb on - strand, within Shewana3_4221 at 94.492 kb on - strand, within Shewana3_4221 at 94.769 kb on - strand at 94.852 kb on - strand at 95.025 kb on - strand, within Shewana3_4222 at 95.581 kb on + strand, within Shewana3_4223 at 95.705 kb on + strand, within Shewana3_4223
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 92,571 - Shewana3_4220 0.15 -1.7 92,605 - Shewana3_4220 0.19 -0.8 92,789 - Shewana3_4220 0.41 +1.7 92,872 - Shewana3_4220 0.51 -1.6 92,887 - Shewana3_4220 0.53 +0.7 92,913 + Shewana3_4220 0.56 +0.2 93,003 - Shewana3_4220 0.67 -0.3 93,147 + Shewana3_4220 0.84 -1.1 93,506 - -1.3 93,640 - -0.0 93,661 + +1.5 93,664 - +0.1 93,928 + Shewana3_4221 0.29 +0.3 94,157 - Shewana3_4221 0.48 +0.2 94,173 + Shewana3_4221 0.49 +0.2 94,203 - Shewana3_4221 0.51 +0.4 94,492 - Shewana3_4221 0.74 +0.2 94,492 - Shewana3_4221 0.74 +0.8 94,769 - +0.2 94,852 - +1.0 95,025 - Shewana3_4222 0.55 +0.4 95,581 + Shewana3_4223 0.15 +0.7 95,705 + Shewana3_4223 0.29 -1.2
Or see this region's nucleotide sequence