Strain Fitness in Shewanella loihica PV-4 around Shew_3574

Experiment: a-Ketoglutaric (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	a-Ketoglutaric (C)
4,268,540	-		Shew_3573	0.68	-0.4
4,268,563	+		Shew_3573	0.69	-1.1
4,268,674	+		Shew_3573	0.75	-1.0
4,268,864	+		Shew_3573	0.86	-1.6
4,268,874	-		Shew_3573	0.87	-0.7
4,268,923	+		Shew_3573	0.89	-0.9
4,268,955	+				+0.2
4,269,046	-				-0.9
4,269,112	-				-0.7
4,269,173	+				-2.5
4,269,191	-				-1.5
4,269,191	-				-1.4
4,269,449	-				-0.5
4,269,610	-		Shew_3574	0.11	-0.9
4,269,756	-		Shew_3574	0.20	-1.7
4,269,765	+		Shew_3574	0.21	-1.3
4,269,850	+		Shew_3574	0.26	-1.9
4,269,925	-		Shew_3574	0.31	-0.8
4,269,951	+		Shew_3574	0.33	-0.8
4,270,031	+		Shew_3574	0.38	-1.4
4,270,125	-		Shew_3574	0.45	-0.6
4,270,326	-		Shew_3574	0.58	-0.8
4,270,336	-		Shew_3574	0.58	-0.9
4,270,339	+		Shew_3574	0.59	-0.8
4,270,352	-		Shew_3574	0.59	-0.9
4,270,437	+		Shew_3574	0.65	-0.9
4,270,562	+		Shew_3574	0.73	-1.0
4,270,570	-		Shew_3574	0.74	-3.4
4,270,570	-		Shew_3574	0.74	-1.5
4,270,735	-		Shew_3574	0.85	-0.0
4,270,817	+				-1.0
4,270,919	+				-0.8
4,270,943	+				-0.6
4,270,951	-				-2.4
4,270,970	-				+0.2
4,270,987	+				-2.1
4,270,987	+				-0.7
4,270,995	-				-0.6
4,270,995	-				-0.3
4,270,995	-				-0.6
4,270,995	-				-0.7
4,270,995	-				-0.9
4,270,995	-				-0.9
4,270,995	-				-2.3
4,270,996	-				-1.0
4,271,006	-				-0.0
4,271,054	-				+0.6
4,271,090	+				+1.4
4,271,098	-				+0.4
4,271,098	-				-0.3
4,271,098	-				-0.6
4,271,149	+				-0.1
4,271,149	+				+0.2
4,271,150	-				+0.9
4,271,232	+				+0.2
4,271,249	+				+0.2
4,271,249	+				-0.1
4,271,249	+				+0.1
4,271,249	+				+0.1
4,271,249	+				+2.8
4,271,249	+				+0.0
4,271,249	+				+0.2
4,271,249	+				+0.4
4,271,257	-				-0.1
4,271,257	-				+0.1
4,271,257	-				+0.2
4,271,257	-				-0.0
4,271,257	-				+0.4
4,271,257	-				-0.7
4,271,257	-				-0.4
4,271,257	-				-0.1
4,271,257	-				+0.1
4,271,264	+				-1.4
4,271,266	+				+0.4
4,271,266	+				+0.3
4,271,266	+				+0.7
4,271,266	+				+1.7
4,271,266	+				+0.9
4,271,266	+				-1.6
4,271,269	-				-1.0
4,271,272	-				-0.1
4,271,272	-				+0.2
4,271,272	-				-0.0
4,271,272	-				+0.5
4,271,274	-				-0.5
4,271,274	-				+0.3
4,271,274	-				-0.2
4,271,274	-				+0.8
4,271,276	+				-1.6
4,271,276	+				-0.1
4,271,284	-				+1.0
4,271,284	-				+0.1
4,271,310	+				+1.5
4,271,310	+				-0.6
4,271,310	+				-0.4
4,271,310	+				-0.1
4,271,311	+				+0.9
4,271,311	+				+0.2
4,271,311	+				+1.4
4,271,311	+				-0.2
4,271,311	+				-0.1
4,271,311	+				+0.2
4,271,311	+				+1.9
4,271,311	+				+0.2
4,271,311	+				-0.7
4,271,311	+				+0.8
4,271,311	+				+0.8
4,271,318	-				-0.2
4,271,318	-				+0.4
4,271,318	-				+0.1
4,271,318	-				+0.1
4,271,318	-				-3.1
4,271,318	-				-0.6
4,271,319	-				-0.4
4,271,319	-				+0.1
4,271,319	-				+0.2
4,271,319	-				+0.0
4,271,319	-				+0.5
4,271,319	-				+0.3
4,271,319	-				-0.6
4,271,319	-				+0.3
4,271,319	-				+0.2
4,271,319	-				-0.6
4,271,319	-				+0.5
4,271,326	-				+0.1
4,271,352	+				-0.0
4,271,379	+				+0.3
4,271,403	+				+0.1
4,271,403	+				-0.1
4,271,403	+				-0.4
4,271,410	+				+0.2
4,271,410	+				-0.6
4,271,418	-				+0.2
4,271,418	-				-0.1
4,271,418	-				-0.0
4,271,418	-				-2.2
4,271,418	-				+0.0
4,271,418	-				-0.3
4,271,424	+				+1.4
4,271,424	+				-0.3
4,271,424	+				-1.5
4,271,432	-				-0.2
4,271,432	-				-0.0
4,271,432	-				-0.0
4,271,432	-				+0.4
4,271,432	-				+0.3
4,271,432	-				+0.7
4,271,437	-				-0.3
4,271,453	+				+0.2
4,271,453	+				+0.2
4,271,453	+				+0.5
4,271,453	+				-0.4
4,271,453	+				+1.7
4,271,453	+				-1.1
4,271,453	+				+0.2
4,271,453	+				+0.6
4,271,453	+				+0.1
4,271,453	+				-0.4
4,271,461	-				+0.2
4,271,461	-				+0.3
4,271,461	-				+0.1
4,271,461	-				+0.7
4,271,461	-				+0.4
4,271,461	-				-0.1
4,271,465	+				+0.2
4,271,465	+				-0.1
4,271,466	-				-0.3
4,271,467	+				+0.2
4,271,467	+				-0.8
4,271,472	-				+0.2
4,271,473	-				-0.0
4,271,473	-				-0.7
4,271,474	+				-1.8
4,271,475	-				-0.4
4,271,475	+				-0.2
4,271,475	+				+0.0
4,271,475	+				+1.4
4,271,475	+				-0.5
4,271,475	-				+0.3
4,271,476	+				-0.8
4,271,477	+				+0.0
4,271,477	+				-1.8
4,271,477	+				+0.1
4,271,477	+				-0.9
4,271,477	-				+1.1
4,271,477	+				+1.5
4,271,479	+				-0.1
4,271,479	+				-0.4
4,271,479	+				-1.5
4,271,479	+				+0.1
4,271,483	-				-0.3
4,271,485	-				+0.9
4,271,485	-				-0.0
4,271,487	-				+0.7
4,271,489	+				-1.1
4,271,489	+				+0.4
4,271,492	-				-0.0
4,271,497	-				+0.4
4,271,497	-				+0.2
4,271,527	+				+0.4
4,271,534	+				-0.4
4,271,535	+				+1.2
4,271,535	+				+0.5
4,271,535	+				+0.8
4,271,542	-				+0.4
4,271,542	-				-0.0
4,271,543	-				-0.4
4,271,543	-				-1.0
4,271,543	-				-1.0
4,271,550	-				-0.2
4,271,558	+				+0.3
4,271,566	-				+0.4
4,271,566	-				+0.4
4,271,576	+				+0.3
4,271,591	+				-0.5
4,271,599	-				+0.5
4,271,601	+				+0.2
4,271,601	+				-0.4
4,271,601	+				-0.1
4,271,602	+				+0.8
4,271,603	-				+0.5
4,271,609	-				+1.2
4,271,641	+				+1.1
4,271,652	+				-0.8
4,271,669	+				+1.1
4,271,669	+				-1.0
4,271,669	+				+0.2
4,271,674	+				+0.4
4,271,677	-				+0.1
4,271,677	-				+0.4
4,271,712	-				+0.9
4,271,738	+				+0.8
4,271,743	+		Shew_3575	0.11	+1.6
4,271,743	+		Shew_3575	0.11	-1.6
4,271,748	+		Shew_3575	0.12	-0.3
4,271,749	+		Shew_3575	0.12	+0.5
4,271,751	-		Shew_3575	0.13	-0.3
4,271,759	+		Shew_3575	0.14	-0.9
4,271,772	-		Shew_3575	0.17	+1.5
4,271,832	+		Shew_3575	0.31	+0.0
4,271,832	+		Shew_3575	0.31	+0.1
4,271,832	+		Shew_3575	0.31	+0.2
4,271,832	+		Shew_3575	0.31	+0.4
4,271,845	+		Shew_3575	0.34	+1.0
4,271,903	+		Shew_3575	0.46	+0.6
4,271,903	+		Shew_3575	0.46	+0.4
4,271,903	+		Shew_3575	0.46	-0.2
4,271,903	+		Shew_3575	0.46	-0.1
4,271,903	+		Shew_3575	0.46	+0.9
4,271,903	+		Shew_3575	0.46	+0.4
4,271,903	+		Shew_3575	0.46	-1.7
4,271,903	+		Shew_3575	0.46	-0.3
4,271,903	+		Shew_3575	0.46	+0.1
4,271,903	+		Shew_3575	0.46	+0.0
4,271,903	+		Shew_3575	0.46	-0.4
4,271,911	-		Shew_3575	0.48	+0.1
4,271,911	-		Shew_3575	0.48	+0.4
4,271,911	-		Shew_3575	0.48	+0.3
4,271,911	-		Shew_3575	0.48	+0.2
4,271,911	-		Shew_3575	0.48	+1.1
4,271,911	-		Shew_3575	0.48	-0.2
4,271,911	-		Shew_3575	0.48	+1.4
4,271,911	-		Shew_3575	0.48	-0.9
4,271,911	-		Shew_3575	0.48	+0.2
4,271,911	-		Shew_3575	0.48	+0.5
4,271,927	+		Shew_3575	0.52	-0.2
4,271,927	+		Shew_3575	0.52	-0.4
4,271,927	+		Shew_3575	0.52	-0.1
4,271,927	+		Shew_3575	0.52	+0.3
4,271,935	-		Shew_3575	0.54	-0.0
4,271,935	-		Shew_3575	0.54	+0.2
4,271,938	+		Shew_3575	0.54	+1.0
4,271,938	+		Shew_3575	0.54	+0.2
4,271,941	+		Shew_3575	0.55	+0.1
4,271,946	+		Shew_3575	0.56	-3.7
4,271,946	+		Shew_3575	0.56	-0.5
4,271,949	-		Shew_3575	0.57	+1.3
4,271,949	-		Shew_3575	0.57	-0.4
4,271,950	+		Shew_3575	0.57	+0.6
4,271,952	+		Shew_3575	0.57	+0.4
4,271,952	+		Shew_3575	0.57	-0.5
4,271,952	+		Shew_3575	0.57	+0.1
4,271,954	-		Shew_3575	0.58	+0.0
4,271,954	-		Shew_3575	0.58	+0.2
4,271,954	-		Shew_3575	0.58	+0.4
4,271,954	+		Shew_3575	0.58	-0.2
4,271,954	-		Shew_3575	0.58	+0.3
4,271,960	-		Shew_3575	0.59	-1.1
4,271,962	-		Shew_3575	0.60	+1.5
4,271,963	+		Shew_3575	0.60	+1.1
4,271,963	+		Shew_3575	0.60	+0.4
4,271,963	+		Shew_3575	0.60	+0.3
4,271,963	+		Shew_3575	0.60	+0.1
4,271,965	+		Shew_3575	0.60	-0.0
4,271,965	+		Shew_3575	0.60	-0.4
4,271,965	+		Shew_3575	0.60	-0.7
4,271,965	+		Shew_3575	0.60	-0.1
4,271,965	+		Shew_3575	0.60	+0.2
4,271,968	+		Shew_3575	0.61	+0.2
4,271,968	-		Shew_3575	0.61	+1.7