Strain Fitness in Shewanella loihica PV-4 around Shew_2773

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2771 and Shew_2772 are separated by 85 nucleotidesShew_2772 and Shew_2773 are separated by 100 nucleotidesShew_2773 and Shew_2774 are separated by 45 nucleotides Shew_2771: Shew_2771 - 1-deoxy-D-xylulose-5-phosphate synthase (RefSeq), at 3,275,766 to 3,277,634 _2771 Shew_2772: Shew_2772 - GrpE protein (RefSeq), at 3,277,720 to 3,278,337 _2772 Shew_2773: Shew_2773 - NAD(+) kinase (RefSeq), at 3,278,438 to 3,279,316 _2773 Shew_2774: Shew_2774 - TonB family protein (RefSeq), at 3,279,362 to 3,280,426 _2774 Position (kb) 3278 3279 3280Strain fitness (log2 ratio) -1 0 1at 3279.318 kb on - strandat 3279.529 kb on - strand, within Shew_2774at 3279.852 kb on + strand, within Shew_2774at 3280.078 kb on - strand, within Shew_2774at 3280.111 kb on - strand, within Shew_2774

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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3,279,318 - -0.5
3,279,529 - Shew_2774 0.16 +0.1
3,279,852 + Shew_2774 0.46 +0.7
3,280,078 - Shew_2774 0.67 +0.1
3,280,111 - Shew_2774 0.70 -0.0

Or see this region's nucleotide sequence