Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1771 and Shew_1772 are separated by 10 nucleotides Shew_1772 and Shew_1773 are separated by 100 nucleotides Shew_1773 and Shew_1774 are separated by 301 nucleotides Shew_1774 and Shew_1775 are separated by 173 nucleotides
Shew_1771: Shew_1771 - nitrate reductase cytochrome c-type subunit (NapB) (RefSeq), at 2,026,726 to 2,027,205
_1771
Shew_1772: Shew_1772 - NapC/NirT family periplasmic nitrate (or nitrite) reductase c-type cytochrome (RefSeq), at 2,027,216 to 2,027,803
_1772
Shew_1773: Shew_1773 - LysR family transcriptional regulator (RefSeq), at 2,027,904 to 2,028,824
_1773
Shew_1774: Shew_1774 - excinuclease ATPase subunit (RefSeq), at 2,029,126 to 2,029,623
_1774
Shew_1775: Shew_1775 - acetolactate synthase 3 regulatory subunit (RefSeq), at 2,029,797 to 2,030,291
_1775
Position (kb)
2027
2028
2029 Strain fitness (log2 ratio)
-1
0
1
2 at 2027.029 kb on + strand, within Shew_1771 at 2027.150 kb on + strand, within Shew_1771 at 2027.157 kb on - strand, within Shew_1771 at 2027.246 kb on + strand at 2027.902 kb on + strand at 2027.910 kb on - strand at 2027.969 kb on + strand at 2028.088 kb on - strand, within Shew_1773 at 2028.634 kb on + strand, within Shew_1773 at 2028.962 kb on + strand at 2029.290 kb on + strand, within Shew_1774 at 2029.298 kb on - strand, within Shew_1774
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 2,027,029 + Shew_1771 0.63 -0.3 2,027,150 + Shew_1771 0.88 -0.0 2,027,157 - Shew_1771 0.90 +1.7 2,027,246 + +0.2 2,027,902 + +0.1 2,027,910 - +2.5 2,027,969 + -0.0 2,028,088 - Shew_1773 0.20 +1.4 2,028,634 + Shew_1773 0.79 +0.0 2,028,962 + +0.4 2,029,290 + Shew_1774 0.33 +0.1 2,029,298 - Shew_1774 0.35 +0.3
Or see this region's nucleotide sequence