Strain Fitness in Shewanella loihica PV-4 around Shew_1668

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1667 and Shew_1668 are separated by 135 nucleotidesShew_1668 and Shew_1669 are separated by 162 nucleotides Shew_1667: Shew_1667 - acetyl-CoA acetyltransferase (RefSeq), at 1,915,940 to 1,917,130 _1667 Shew_1668: Shew_1668 - methylmalonate-semialdehyde dehydrogenase (RefSeq), at 1,917,266 to 1,918,771 _1668 Shew_1669: Shew_1669 - butyryl-CoA dehydrogenase (RefSeq), at 1,918,934 to 1,920,091 _1669 Position (kb) 1917 1918 1919Strain fitness (log2 ratio) -3 -2 -1 0 1at 1916.487 kb on + strand, within Shew_1667at 1917.582 kb on + strand, within Shew_1668at 1917.582 kb on + strand, within Shew_1668at 1917.692 kb on - strand, within Shew_1668at 1917.702 kb on + strand, within Shew_1668at 1917.779 kb on + strand, within Shew_1668at 1917.917 kb on - strand, within Shew_1668at 1918.118 kb on - strand, within Shew_1668at 1918.279 kb on + strand, within Shew_1668at 1918.287 kb on - strand, within Shew_1668at 1918.287 kb on - strand, within Shew_1668at 1919.184 kb on + strand, within Shew_1669at 1919.291 kb on + strand, within Shew_1669at 1919.299 kb on - strand, within Shew_1669at 1919.352 kb on - strand, within Shew_1669at 1919.371 kb on - strand, within Shew_1669at 1919.681 kb on - strand, within Shew_1669at 1919.720 kb on - strand, within Shew_1669

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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1,916,487 + Shew_1667 0.46 -1.8
1,917,582 + Shew_1668 0.21 -0.1
1,917,582 + Shew_1668 0.21 -0.3
1,917,692 - Shew_1668 0.28 -2.1
1,917,702 + Shew_1668 0.29 -1.2
1,917,779 + Shew_1668 0.34 -0.7
1,917,917 - Shew_1668 0.43 -3.3
1,918,118 - Shew_1668 0.57 -2.5
1,918,279 + Shew_1668 0.67 -0.3
1,918,287 - Shew_1668 0.68 -1.5
1,918,287 - Shew_1668 0.68 -2.2
1,919,184 + Shew_1669 0.22 -0.9
1,919,291 + Shew_1669 0.31 +0.0
1,919,299 - Shew_1669 0.32 -2.1
1,919,352 - Shew_1669 0.36 -0.6
1,919,371 - Shew_1669 0.38 -0.7
1,919,681 - Shew_1669 0.65 -1.2
1,919,720 - Shew_1669 0.68 -3.7

Or see this region's nucleotide sequence