Strain Fitness in Shewanella loihica PV-4 around Shew_0564

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0563 and Shew_0564 are separated by 9 nucleotidesShew_0564 and Shew_0565 overlap by 8 nucleotides Shew_0563: Shew_0563 - N-acetylmuramoyl-L-alanine amidase (RefSeq), at 637,936 to 639,255 _0563 Shew_0564: Shew_0564 - DNA mismatch repair protein MutL (RefSeq), at 639,265 to 641,160 _0564 Shew_0565: Shew_0565 - tRNA delta(2)-isopentenylpyrophosphate transferase (RefSeq), at 641,153 to 642,079 _0565 Position (kb) 639 640 641 642Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 638.948 kb on + strand, within Shew_0563at 639.209 kb on - strandat 639.355 kb on + strandat 639.363 kb on - strandat 639.363 kb on - strandat 639.478 kb on - strand, within Shew_0564at 639.494 kb on + strand, within Shew_0564at 639.494 kb on + strand, within Shew_0564at 639.494 kb on + strand, within Shew_0564at 639.613 kb on - strand, within Shew_0564at 639.638 kb on - strand, within Shew_0564at 639.652 kb on - strand, within Shew_0564at 639.962 kb on + strand, within Shew_0564at 640.178 kb on + strand, within Shew_0564at 640.186 kb on - strand, within Shew_0564at 640.225 kb on - strand, within Shew_0564at 640.519 kb on + strand, within Shew_0564at 640.586 kb on - strand, within Shew_0564at 640.643 kb on + strand, within Shew_0564at 640.699 kb on + strand, within Shew_0564at 641.242 kb on + strandat 641.590 kb on + strand, within Shew_0565at 641.717 kb on + strand, within Shew_0565at 641.768 kb on + strand, within Shew_0565at 641.768 kb on + strand, within Shew_0565at 641.987 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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638,948 + Shew_0563 0.77 -1.8
639,209 - +0.7
639,355 + +1.2
639,363 - +0.5
639,363 - -1.1
639,478 - Shew_0564 0.11 -0.1
639,494 + Shew_0564 0.12 +0.9
639,494 + Shew_0564 0.12 +0.7
639,494 + Shew_0564 0.12 +0.6
639,613 - Shew_0564 0.18 +0.3
639,638 - Shew_0564 0.20 +0.8
639,652 - Shew_0564 0.20 +1.3
639,962 + Shew_0564 0.37 +0.9
640,178 + Shew_0564 0.48 +0.9
640,186 - Shew_0564 0.49 +1.8
640,225 - Shew_0564 0.51 +0.3
640,519 + Shew_0564 0.66 +0.5
640,586 - Shew_0564 0.70 +1.1
640,643 + Shew_0564 0.73 +0.8
640,699 + Shew_0564 0.76 +0.6
641,242 + -4.3
641,590 + Shew_0565 0.47 -1.3
641,717 + Shew_0565 0.61 -0.9
641,768 + Shew_0565 0.66 -1.1
641,768 + Shew_0565 0.66 -2.1
641,987 + -0.3

Or see this region's nucleotide sequence