Strain Fitness in Shewanella loihica PV-4 around Shew_0530

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0529 and Shew_0530 are separated by 233 nucleotidesShew_0530 and Shew_0531 are separated by 62 nucleotides Shew_0529: Shew_0529 - Sel1 domain-containing protein (RefSeq), at 598,302 to 599,129 _0529 Shew_0530: Shew_0530 - FAD dependent oxidoreductase (RefSeq), at 599,363 to 600,490 _0530 Shew_0531: Shew_0531 - DEAD/DEAH box helicase domain-containing protein (RefSeq), at 600,553 to 602,352 _0531 Position (kb) 599 600 601Strain fitness (log2 ratio) -2 -1 0 1at 598.698 kb on - strand, within Shew_0529at 599.062 kb on + strandat 599.219 kb on + strandat 599.308 kb on + strandat 599.491 kb on - strand, within Shew_0530at 599.562 kb on - strand, within Shew_0530at 599.566 kb on + strand, within Shew_0530at 599.819 kb on - strand, within Shew_0530at 599.993 kb on - strand, within Shew_0530at 600.012 kb on + strand, within Shew_0530at 600.678 kb on - strandat 601.070 kb on + strand, within Shew_0531at 601.078 kb on - strand, within Shew_0531at 601.294 kb on - strand, within Shew_0531

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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598,698 - Shew_0529 0.48 +0.2
599,062 + +0.1
599,219 + +0.0
599,308 + +0.1
599,491 - Shew_0530 0.11 -0.4
599,562 - Shew_0530 0.18 +0.1
599,566 + Shew_0530 0.18 +1.4
599,819 - Shew_0530 0.40 +0.6
599,993 - Shew_0530 0.56 +0.1
600,012 + Shew_0530 0.58 +0.2
600,678 - -0.2
601,070 + Shew_0531 0.29 -0.8
601,078 - Shew_0531 0.29 +0.0
601,294 - Shew_0531 0.41 -2.0

Or see this region's nucleotide sequence