Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_R0011 and Shew_R0012 are separated by 33 nucleotides Shew_R0012 and Shew_0197 are separated by 101 nucleotides Shew_0197 and Shew_0198 are separated by 217 nucleotides Shew_0198 and Shew_0199 are separated by 57 nucleotides Shew_0199 and Shew_0200 overlap by 1 nucleotides
Shew_R0011: Shew_R0011 - 5S ribosomal RNA (RefSeq), at 208,189 to 208,309
_R0011
Shew_R0012: Shew_R0012 - tRNA-Asp (RefSeq), at 208,343 to 208,419
_R0012
Shew_0197: Shew_0197 - hypothetical protein (RefSeq), at 208,521 to 209,021
_0197
Shew_0198: Shew_0198 - competence/damage-inducible protein CinA (RefSeq), at 209,239 to 210,513
_0198
Shew_0199: Shew_0199 - hypothetical protein (RefSeq), at 210,571 to 211,110
_0199
Shew_0200: Shew_0200 - phosphoenolpyruvate carboxylase (RefSeq), at 211,110 to 213,746
_0200
Position (kb) 209
210
211 Strain fitness (log2 ratio) -1
0
1 at 208.791 kb on + strand, within Shew_0197 at 209.188 kb on + strand at 209.205 kb on - strand at 209.551 kb on - strand, within Shew_0198 at 209.646 kb on - strand, within Shew_0198 at 209.735 kb on - strand, within Shew_0198 at 209.857 kb on + strand, within Shew_0198 at 209.962 kb on + strand, within Shew_0198 at 210.152 kb on + strand, within Shew_0198 at 210.152 kb on + strand, within Shew_0198 at 210.420 kb on + strand at 210.449 kb on + strand at 210.457 kb on - strand at 210.719 kb on + strand, within Shew_0199 at 210.749 kb on - strand, within Shew_0199 at 210.777 kb on + strand, within Shew_0199 at 211.249 kb on - strand at 211.426 kb on - strand, within Shew_0200
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 208,791 + Shew_0197 0.54 -0.9 209,188 + -0.0 209,205 - +0.2 209,551 - Shew_0198 0.24 -0.1 209,646 - Shew_0198 0.32 -0.3 209,735 - Shew_0198 0.39 +0.6 209,857 + Shew_0198 0.48 -1.0 209,962 + Shew_0198 0.57 -1.5 210,152 + Shew_0198 0.72 -0.3 210,152 + Shew_0198 0.72 +0.2 210,420 + +0.7 210,449 + +0.0 210,457 - +0.1 210,719 + Shew_0199 0.27 +0.4 210,749 - Shew_0199 0.33 +1.2 210,777 + Shew_0199 0.38 +1.2 211,249 - +0.4 211,426 - Shew_0200 0.12 -0.2
Or see this region's nucleotide sequence