Experiment: L-Arginine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_4066 and HP15_4067 are separated by 11 nucleotides HP15_4067 and HP15_4068 are separated by 32 nucleotides HP15_4068 and HP15_4069 are separated by 4 nucleotides
HP15_4066: HP15_4066 - extracellular solute-binding protein, family 1, at 4,300,647 to 4,301,693
_4066
HP15_4067: HP15_4067 - spermidine/putrescine ABC transporter ATPase subunit, at 4,301,705 to 4,302,793
_4067
HP15_4068: HP15_4068 - binding-protein-dependent transport systems inner membrane component, at 4,302,826 to 4,303,650
_4068
HP15_4069: HP15_4069 - binding-protein-dependent transport systems inner membrane component, at 4,303,655 to 4,304,506
_4069
Position (kb)
4301
4302
4303 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4300.784 kb on + strand, within HP15_4066 at 4300.863 kb on + strand, within HP15_4066 at 4300.871 kb on - strand, within HP15_4066 at 4300.936 kb on - strand, within HP15_4066 at 4300.978 kb on + strand, within HP15_4066 at 4301.018 kb on - strand, within HP15_4066 at 4301.039 kb on - strand, within HP15_4066 at 4301.156 kb on - strand, within HP15_4066 at 4301.186 kb on - strand, within HP15_4066 at 4301.219 kb on + strand, within HP15_4066 at 4301.219 kb on + strand, within HP15_4066 at 4301.402 kb on + strand, within HP15_4066 at 4301.408 kb on + strand, within HP15_4066 at 4301.409 kb on + strand, within HP15_4066 at 4301.416 kb on - strand, within HP15_4066 at 4301.547 kb on - strand, within HP15_4066 at 4301.664 kb on + strand at 4301.783 kb on - strand at 4301.807 kb on + strand at 4301.815 kb on - strand, within HP15_4067 at 4302.109 kb on + strand, within HP15_4067 at 4302.114 kb on - strand, within HP15_4067 at 4302.155 kb on - strand, within HP15_4067 at 4302.201 kb on + strand, within HP15_4067 at 4302.228 kb on - strand, within HP15_4067 at 4302.232 kb on + strand, within HP15_4067 at 4302.289 kb on + strand, within HP15_4067 at 4302.289 kb on + strand, within HP15_4067 at 4302.360 kb on + strand, within HP15_4067 at 4302.454 kb on - strand, within HP15_4067 at 4302.483 kb on - strand, within HP15_4067 at 4302.491 kb on + strand, within HP15_4067 at 4302.491 kb on + strand, within HP15_4067 at 4302.496 kb on + strand, within HP15_4067 at 4302.542 kb on - strand, within HP15_4067 at 4302.578 kb on + strand, within HP15_4067 at 4302.590 kb on + strand, within HP15_4067 at 4302.617 kb on + strand, within HP15_4067 at 4302.634 kb on - strand, within HP15_4067 at 4302.660 kb on - strand, within HP15_4067 at 4302.816 kb on + strand at 4302.843 kb on + strand at 4302.898 kb on + strand at 4302.937 kb on - strand, within HP15_4068 at 4302.943 kb on - strand, within HP15_4068 at 4302.983 kb on + strand, within HP15_4068 at 4303.051 kb on + strand, within HP15_4068 at 4303.072 kb on + strand, within HP15_4068 at 4303.109 kb on + strand, within HP15_4068 at 4303.151 kb on - strand, within HP15_4068 at 4303.201 kb on + strand, within HP15_4068 at 4303.201 kb on + strand, within HP15_4068 at 4303.275 kb on - strand, within HP15_4068 at 4303.310 kb on + strand, within HP15_4068 at 4303.324 kb on + strand, within HP15_4068 at 4303.370 kb on + strand, within HP15_4068 at 4303.395 kb on + strand, within HP15_4068 at 4303.403 kb on - strand, within HP15_4068 at 4303.403 kb on - strand, within HP15_4068 at 4303.491 kb on - strand, within HP15_4068 at 4303.553 kb on + strand, within HP15_4068 at 4303.553 kb on + strand, within HP15_4068 at 4303.561 kb on - strand, within HP15_4068 at 4303.567 kb on - strand, within HP15_4068 at 4303.622 kb on - strand at 4303.670 kb on - strand at 4303.771 kb on - strand, within HP15_4069
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine as (N) remove 4,300,784 + HP15_4066 0.13 +2.5 4,300,863 + HP15_4066 0.21 +1.6 4,300,871 - HP15_4066 0.21 +0.6 4,300,936 - HP15_4066 0.28 +0.5 4,300,978 + HP15_4066 0.32 +2.1 4,301,018 - HP15_4066 0.35 -2.6 4,301,039 - HP15_4066 0.37 +3.1 4,301,156 - HP15_4066 0.49 +1.8 4,301,186 - HP15_4066 0.51 +0.1 4,301,219 + HP15_4066 0.55 +1.6 4,301,219 + HP15_4066 0.55 -1.0 4,301,402 + HP15_4066 0.72 -0.0 4,301,408 + HP15_4066 0.73 +1.6 4,301,409 + HP15_4066 0.73 -0.6 4,301,416 - HP15_4066 0.73 +0.1 4,301,547 - HP15_4066 0.86 +2.1 4,301,664 + -2.1 4,301,783 - -0.7 4,301,807 + -0.1 4,301,815 - HP15_4067 0.10 +0.4 4,302,109 + HP15_4067 0.37 -0.1 4,302,114 - HP15_4067 0.38 +2.3 4,302,155 - HP15_4067 0.41 +0.6 4,302,201 + HP15_4067 0.46 +0.6 4,302,228 - HP15_4067 0.48 -0.0 4,302,232 + HP15_4067 0.48 +2.1 4,302,289 + HP15_4067 0.54 +0.6 4,302,289 + HP15_4067 0.54 -1.2 4,302,360 + HP15_4067 0.60 +0.1 4,302,454 - HP15_4067 0.69 -2.3 4,302,483 - HP15_4067 0.71 -1.0 4,302,491 + HP15_4067 0.72 -0.4 4,302,491 + HP15_4067 0.72 -0.9 4,302,496 + HP15_4067 0.73 -1.1 4,302,542 - HP15_4067 0.77 -0.4 4,302,578 + HP15_4067 0.80 +0.1 4,302,590 + HP15_4067 0.81 -0.4 4,302,617 + HP15_4067 0.84 -0.6 4,302,634 - HP15_4067 0.85 -0.5 4,302,660 - HP15_4067 0.88 -1.3 4,302,816 + +1.4 4,302,843 + +2.2 4,302,898 + -0.5 4,302,937 - HP15_4068 0.13 +2.3 4,302,943 - HP15_4068 0.14 -0.7 4,302,983 + HP15_4068 0.19 +1.2 4,303,051 + HP15_4068 0.27 -1.5 4,303,072 + HP15_4068 0.30 +0.3 4,303,109 + HP15_4068 0.34 +1.6 4,303,151 - HP15_4068 0.39 -1.0 4,303,201 + HP15_4068 0.45 -0.0 4,303,201 + HP15_4068 0.45 -0.9 4,303,275 - HP15_4068 0.54 +2.0 4,303,310 + HP15_4068 0.59 -1.0 4,303,324 + HP15_4068 0.60 +1.7 4,303,370 + HP15_4068 0.66 +1.9 4,303,395 + HP15_4068 0.69 +1.7 4,303,403 - HP15_4068 0.70 +2.0 4,303,403 - HP15_4068 0.70 +0.1 4,303,491 - HP15_4068 0.81 +1.4 4,303,553 + HP15_4068 0.88 -1.2 4,303,553 + HP15_4068 0.88 -1.3 4,303,561 - HP15_4068 0.89 +2.0 4,303,567 - HP15_4068 0.90 -0.9 4,303,622 - -0.5 4,303,670 - -1.3 4,303,771 - HP15_4069 0.14 -1.8
Or see this region's nucleotide sequence