Strain Fitness in Marinobacter adhaerens HP15 around HP15_4067

Experiment: L-Arginine as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_4066 and HP15_4067 are separated by 11 nucleotidesHP15_4067 and HP15_4068 are separated by 32 nucleotidesHP15_4068 and HP15_4069 are separated by 4 nucleotides HP15_4066: HP15_4066 - extracellular solute-binding protein, family 1, at 4,300,647 to 4,301,693 _4066 HP15_4067: HP15_4067 - spermidine/putrescine ABC transporter ATPase subunit, at 4,301,705 to 4,302,793 _4067 HP15_4068: HP15_4068 - binding-protein-dependent transport systems inner membrane component, at 4,302,826 to 4,303,650 _4068 HP15_4069: HP15_4069 - binding-protein-dependent transport systems inner membrane component, at 4,303,655 to 4,304,506 _4069 Position (kb) 4301 4302 4303Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4300.784 kb on + strand, within HP15_4066at 4300.863 kb on + strand, within HP15_4066at 4300.871 kb on - strand, within HP15_4066at 4300.936 kb on - strand, within HP15_4066at 4300.978 kb on + strand, within HP15_4066at 4301.018 kb on - strand, within HP15_4066at 4301.039 kb on - strand, within HP15_4066at 4301.156 kb on - strand, within HP15_4066at 4301.186 kb on - strand, within HP15_4066at 4301.219 kb on + strand, within HP15_4066at 4301.219 kb on + strand, within HP15_4066at 4301.402 kb on + strand, within HP15_4066at 4301.408 kb on + strand, within HP15_4066at 4301.409 kb on + strand, within HP15_4066at 4301.416 kb on - strand, within HP15_4066at 4301.547 kb on - strand, within HP15_4066at 4301.664 kb on + strandat 4301.783 kb on - strandat 4301.807 kb on + strandat 4301.815 kb on - strand, within HP15_4067at 4302.109 kb on + strand, within HP15_4067at 4302.114 kb on - strand, within HP15_4067at 4302.155 kb on - strand, within HP15_4067at 4302.201 kb on + strand, within HP15_4067at 4302.228 kb on - strand, within HP15_4067at 4302.232 kb on + strand, within HP15_4067at 4302.289 kb on + strand, within HP15_4067at 4302.289 kb on + strand, within HP15_4067at 4302.360 kb on + strand, within HP15_4067at 4302.454 kb on - strand, within HP15_4067at 4302.483 kb on - strand, within HP15_4067at 4302.491 kb on + strand, within HP15_4067at 4302.491 kb on + strand, within HP15_4067at 4302.496 kb on + strand, within HP15_4067at 4302.542 kb on - strand, within HP15_4067at 4302.578 kb on + strand, within HP15_4067at 4302.590 kb on + strand, within HP15_4067at 4302.617 kb on + strand, within HP15_4067at 4302.634 kb on - strand, within HP15_4067at 4302.660 kb on - strand, within HP15_4067at 4302.816 kb on + strandat 4302.843 kb on + strandat 4302.898 kb on + strandat 4302.937 kb on - strand, within HP15_4068at 4302.943 kb on - strand, within HP15_4068at 4302.983 kb on + strand, within HP15_4068at 4303.051 kb on + strand, within HP15_4068at 4303.072 kb on + strand, within HP15_4068at 4303.109 kb on + strand, within HP15_4068at 4303.151 kb on - strand, within HP15_4068at 4303.201 kb on + strand, within HP15_4068at 4303.201 kb on + strand, within HP15_4068at 4303.275 kb on - strand, within HP15_4068at 4303.310 kb on + strand, within HP15_4068at 4303.324 kb on + strand, within HP15_4068at 4303.370 kb on + strand, within HP15_4068at 4303.395 kb on + strand, within HP15_4068at 4303.403 kb on - strand, within HP15_4068at 4303.403 kb on - strand, within HP15_4068at 4303.491 kb on - strand, within HP15_4068at 4303.553 kb on + strand, within HP15_4068at 4303.553 kb on + strand, within HP15_4068at 4303.561 kb on - strand, within HP15_4068at 4303.567 kb on - strand, within HP15_4068at 4303.622 kb on - strandat 4303.670 kb on - strandat 4303.771 kb on - strand, within HP15_4069

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine as (N)
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4,300,784 + HP15_4066 0.13 +2.5
4,300,863 + HP15_4066 0.21 +1.6
4,300,871 - HP15_4066 0.21 +0.6
4,300,936 - HP15_4066 0.28 +0.5
4,300,978 + HP15_4066 0.32 +2.1
4,301,018 - HP15_4066 0.35 -2.6
4,301,039 - HP15_4066 0.37 +3.1
4,301,156 - HP15_4066 0.49 +1.8
4,301,186 - HP15_4066 0.51 +0.1
4,301,219 + HP15_4066 0.55 +1.6
4,301,219 + HP15_4066 0.55 -1.0
4,301,402 + HP15_4066 0.72 -0.0
4,301,408 + HP15_4066 0.73 +1.6
4,301,409 + HP15_4066 0.73 -0.6
4,301,416 - HP15_4066 0.73 +0.1
4,301,547 - HP15_4066 0.86 +2.1
4,301,664 + -2.1
4,301,783 - -0.7
4,301,807 + -0.1
4,301,815 - HP15_4067 0.10 +0.4
4,302,109 + HP15_4067 0.37 -0.1
4,302,114 - HP15_4067 0.38 +2.3
4,302,155 - HP15_4067 0.41 +0.6
4,302,201 + HP15_4067 0.46 +0.6
4,302,228 - HP15_4067 0.48 -0.0
4,302,232 + HP15_4067 0.48 +2.1
4,302,289 + HP15_4067 0.54 +0.6
4,302,289 + HP15_4067 0.54 -1.2
4,302,360 + HP15_4067 0.60 +0.1
4,302,454 - HP15_4067 0.69 -2.3
4,302,483 - HP15_4067 0.71 -1.0
4,302,491 + HP15_4067 0.72 -0.4
4,302,491 + HP15_4067 0.72 -0.9
4,302,496 + HP15_4067 0.73 -1.1
4,302,542 - HP15_4067 0.77 -0.4
4,302,578 + HP15_4067 0.80 +0.1
4,302,590 + HP15_4067 0.81 -0.4
4,302,617 + HP15_4067 0.84 -0.6
4,302,634 - HP15_4067 0.85 -0.5
4,302,660 - HP15_4067 0.88 -1.3
4,302,816 + +1.4
4,302,843 + +2.2
4,302,898 + -0.5
4,302,937 - HP15_4068 0.13 +2.3
4,302,943 - HP15_4068 0.14 -0.7
4,302,983 + HP15_4068 0.19 +1.2
4,303,051 + HP15_4068 0.27 -1.5
4,303,072 + HP15_4068 0.30 +0.3
4,303,109 + HP15_4068 0.34 +1.6
4,303,151 - HP15_4068 0.39 -1.0
4,303,201 + HP15_4068 0.45 -0.0
4,303,201 + HP15_4068 0.45 -0.9
4,303,275 - HP15_4068 0.54 +2.0
4,303,310 + HP15_4068 0.59 -1.0
4,303,324 + HP15_4068 0.60 +1.7
4,303,370 + HP15_4068 0.66 +1.9
4,303,395 + HP15_4068 0.69 +1.7
4,303,403 - HP15_4068 0.70 +2.0
4,303,403 - HP15_4068 0.70 +0.1
4,303,491 - HP15_4068 0.81 +1.4
4,303,553 + HP15_4068 0.88 -1.2
4,303,553 + HP15_4068 0.88 -1.3
4,303,561 - HP15_4068 0.89 +2.0
4,303,567 - HP15_4068 0.90 -0.9
4,303,622 - -0.5
4,303,670 - -1.3
4,303,771 - HP15_4069 0.14 -1.8

Or see this region's nucleotide sequence