Experiment: L-Arginine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3996 and HP15_3997 overlap by 17 nucleotides HP15_3997 and HP15_3998 are separated by 67 nucleotides HP15_3998 and HP15_3999 overlap by 4 nucleotides
HP15_3996: HP15_3996 - F0F1 ATP synthase subunit alpha, at 4,226,165 to 4,227,682
_3996
HP15_3997: HP15_3997 - H+-transporting two-sector ATPase, gamma subunit, at 4,227,666 to 4,228,568
_3997
HP15_3998: HP15_3998 - secretion protein HlyD, at 4,228,636 to 4,229,703
_3998
HP15_3999: HP15_3999 - AcrB/AcrD/AcrF family protein, at 4,229,700 to 4,232,930
_3999
Position (kb)
4228
4229
4230 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4227.636 kb on - strand at 4227.669 kb on + strand at 4227.678 kb on + strand at 4227.678 kb on + strand at 4227.692 kb on - strand at 4227.724 kb on + strand at 4227.763 kb on - strand, within HP15_3997 at 4227.777 kb on - strand, within HP15_3997 at 4227.808 kb on + strand, within HP15_3997 at 4227.821 kb on - strand, within HP15_3997 at 4227.821 kb on - strand, within HP15_3997 at 4228.014 kb on - strand, within HP15_3997 at 4228.026 kb on - strand, within HP15_3997 at 4228.105 kb on - strand, within HP15_3997 at 4228.151 kb on - strand, within HP15_3997 at 4228.194 kb on + strand, within HP15_3997 at 4228.202 kb on - strand, within HP15_3997 at 4228.202 kb on - strand, within HP15_3997 at 4228.282 kb on - strand, within HP15_3997 at 4228.388 kb on - strand, within HP15_3997 at 4228.463 kb on + strand, within HP15_3997 at 4228.571 kb on - strand at 4228.596 kb on + strand at 4228.604 kb on - strand at 4228.604 kb on - strand at 4228.660 kb on - strand at 4228.675 kb on + strand at 4228.699 kb on + strand at 4228.699 kb on + strand at 4228.707 kb on - strand at 4228.810 kb on + strand, within HP15_3998 at 4228.823 kb on + strand, within HP15_3998 at 4228.872 kb on - strand, within HP15_3998 at 4228.885 kb on - strand, within HP15_3998 at 4228.923 kb on + strand, within HP15_3998 at 4228.931 kb on - strand, within HP15_3998 at 4228.934 kb on + strand, within HP15_3998 at 4228.934 kb on + strand, within HP15_3998 at 4228.942 kb on - strand, within HP15_3998 at 4228.944 kb on + strand, within HP15_3998 at 4229.072 kb on - strand, within HP15_3998 at 4229.117 kb on + strand, within HP15_3998 at 4229.117 kb on + strand, within HP15_3998 at 4229.124 kb on - strand, within HP15_3998 at 4229.131 kb on - strand, within HP15_3998 at 4229.229 kb on + strand, within HP15_3998 at 4229.229 kb on + strand, within HP15_3998 at 4229.251 kb on + strand, within HP15_3998 at 4229.251 kb on + strand, within HP15_3998 at 4229.274 kb on - strand, within HP15_3998 at 4229.339 kb on + strand, within HP15_3998 at 4229.494 kb on - strand, within HP15_3998 at 4229.546 kb on + strand, within HP15_3998 at 4229.554 kb on - strand, within HP15_3998 at 4229.636 kb on + strand at 4229.661 kb on + strand at 4229.896 kb on + strand at 4229.979 kb on - strand at 4229.990 kb on - strand at 4230.039 kb on + strand, within HP15_3999 at 4230.057 kb on + strand, within HP15_3999 at 4230.124 kb on - strand, within HP15_3999 at 4230.130 kb on - strand, within HP15_3999 at 4230.195 kb on + strand, within HP15_3999 at 4230.205 kb on + strand, within HP15_3999 at 4230.217 kb on + strand, within HP15_3999 at 4230.226 kb on - strand, within HP15_3999 at 4230.258 kb on + strand, within HP15_3999 at 4230.427 kb on - strand, within HP15_3999 at 4230.487 kb on + strand, within HP15_3999 at 4230.503 kb on + strand, within HP15_3999 at 4230.608 kb on + strand, within HP15_3999 at 4230.696 kb on - strand, within HP15_3999
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine as (N) remove 4,227,636 - +1.2 4,227,669 + -1.3 4,227,678 + -2.3 4,227,678 + +1.5 4,227,692 - +2.4 4,227,724 + +1.5 4,227,763 - HP15_3997 0.11 -1.1 4,227,777 - HP15_3997 0.12 -0.7 4,227,808 + HP15_3997 0.16 +1.9 4,227,821 - HP15_3997 0.17 +2.0 4,227,821 - HP15_3997 0.17 -2.0 4,228,014 - HP15_3997 0.39 -1.7 4,228,026 - HP15_3997 0.40 -0.4 4,228,105 - HP15_3997 0.49 +0.1 4,228,151 - HP15_3997 0.54 +1.9 4,228,194 + HP15_3997 0.58 +0.1 4,228,202 - HP15_3997 0.59 +1.5 4,228,202 - HP15_3997 0.59 +0.5 4,228,282 - HP15_3997 0.68 -0.8 4,228,388 - HP15_3997 0.80 +1.8 4,228,463 + HP15_3997 0.88 -2.1 4,228,571 - +1.9 4,228,596 + -0.4 4,228,604 - -1.2 4,228,604 - +2.1 4,228,660 - -0.8 4,228,675 + -0.4 4,228,699 + -0.5 4,228,699 + +2.0 4,228,707 - +1.0 4,228,810 + HP15_3998 0.16 +2.6 4,228,823 + HP15_3998 0.18 +0.0 4,228,872 - HP15_3998 0.22 +1.9 4,228,885 - HP15_3998 0.23 +2.5 4,228,923 + HP15_3998 0.27 -0.8 4,228,931 - HP15_3998 0.28 +0.8 4,228,934 + HP15_3998 0.28 +2.0 4,228,934 + HP15_3998 0.28 -0.2 4,228,942 - HP15_3998 0.29 +0.4 4,228,944 + HP15_3998 0.29 +0.4 4,229,072 - HP15_3998 0.41 +1.0 4,229,117 + HP15_3998 0.45 +0.2 4,229,117 + HP15_3998 0.45 -0.4 4,229,124 - HP15_3998 0.46 -0.9 4,229,131 - HP15_3998 0.46 +2.4 4,229,229 + HP15_3998 0.56 +2.2 4,229,229 + HP15_3998 0.56 -0.2 4,229,251 + HP15_3998 0.58 +2.3 4,229,251 + HP15_3998 0.58 +0.6 4,229,274 - HP15_3998 0.60 -1.1 4,229,339 + HP15_3998 0.66 -0.4 4,229,494 - HP15_3998 0.80 -1.3 4,229,546 + HP15_3998 0.85 +1.5 4,229,554 - HP15_3998 0.86 -0.5 4,229,636 + +0.1 4,229,661 + +2.2 4,229,896 + +1.5 4,229,979 - -0.4 4,229,990 - +0.1 4,230,039 + HP15_3999 0.10 -1.7 4,230,057 + HP15_3999 0.11 +0.7 4,230,124 - HP15_3999 0.13 -0.4 4,230,130 - HP15_3999 0.13 -0.7 4,230,195 + HP15_3999 0.15 -0.0 4,230,205 + HP15_3999 0.16 -0.4 4,230,217 + HP15_3999 0.16 -0.2 4,230,226 - HP15_3999 0.16 -0.3 4,230,258 + HP15_3999 0.17 -0.3 4,230,427 - HP15_3999 0.23 -1.2 4,230,487 + HP15_3999 0.24 +2.1 4,230,503 + HP15_3999 0.25 +1.1 4,230,608 + HP15_3999 0.28 -0.5 4,230,696 - HP15_3999 0.31 +2.5
Or see this region's nucleotide sequence