Experiment: L-Arginine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3907 and HP15_3908 are separated by 110 nucleotides HP15_3908 and HP15_3909 are separated by 29 nucleotides HP15_3909 and HP15_3910 are separated by 14 nucleotides
HP15_3907: HP15_3907 - sodium/alanine symporter family protein, at 4,136,239 to 4,137,600
_3907
HP15_3908: HP15_3908 - CBS domain protein, at 4,137,711 to 4,138,214
_3908
HP15_3909: HP15_3909 - carboxylesterase, at 4,138,244 to 4,139,086
_3909
HP15_3910: HP15_3910 - metal dependent phosphohydrolase, at 4,139,101 to 4,140,225
_3910
Position (kb)
4138
4139
4140 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4137.250 kb on - strand, within HP15_3907 at 4137.270 kb on - strand, within HP15_3907 at 4137.391 kb on - strand, within HP15_3907 at 4137.545 kb on + strand at 4137.551 kb on + strand at 4137.551 kb on + strand at 4137.559 kb on - strand at 4137.616 kb on - strand at 4137.856 kb on - strand, within HP15_3908 at 4137.960 kb on + strand, within HP15_3908 at 4137.976 kb on + strand, within HP15_3908 at 4137.981 kb on - strand, within HP15_3908 at 4138.092 kb on - strand, within HP15_3908 at 4138.093 kb on - strand, within HP15_3908 at 4138.109 kb on - strand, within HP15_3908 at 4138.134 kb on - strand, within HP15_3908 at 4138.141 kb on + strand, within HP15_3908 at 4138.149 kb on - strand, within HP15_3908 at 4138.149 kb on - strand, within HP15_3908 at 4138.171 kb on + strand at 4138.209 kb on - strand at 4138.403 kb on + strand, within HP15_3909 at 4138.408 kb on + strand, within HP15_3909 at 4138.416 kb on - strand, within HP15_3909 at 4138.416 kb on - strand, within HP15_3909 at 4138.416 kb on - strand, within HP15_3909 at 4138.453 kb on - strand, within HP15_3909 at 4138.485 kb on + strand, within HP15_3909 at 4138.533 kb on - strand, within HP15_3909 at 4138.577 kb on + strand, within HP15_3909 at 4138.687 kb on + strand, within HP15_3909 at 4138.706 kb on + strand, within HP15_3909 at 4138.711 kb on + strand, within HP15_3909 at 4138.714 kb on - strand, within HP15_3909 at 4138.719 kb on - strand, within HP15_3909 at 4138.781 kb on - strand, within HP15_3909 at 4138.836 kb on + strand, within HP15_3909 at 4138.891 kb on - strand, within HP15_3909 at 4138.909 kb on - strand, within HP15_3909 at 4138.962 kb on + strand, within HP15_3909 at 4139.012 kb on + strand at 4139.107 kb on - strand at 4139.107 kb on - strand at 4139.122 kb on - strand at 4139.148 kb on + strand at 4139.207 kb on + strand at 4139.221 kb on + strand, within HP15_3910 at 4139.263 kb on + strand, within HP15_3910 at 4139.263 kb on + strand, within HP15_3910 at 4139.264 kb on - strand, within HP15_3910 at 4139.271 kb on - strand, within HP15_3910 at 4139.365 kb on - strand, within HP15_3910 at 4139.517 kb on + strand, within HP15_3910 at 4139.526 kb on - strand, within HP15_3910 at 4139.648 kb on + strand, within HP15_3910 at 4139.675 kb on + strand, within HP15_3910 at 4139.675 kb on + strand, within HP15_3910 at 4139.683 kb on - strand, within HP15_3910 at 4139.838 kb on - strand, within HP15_3910 at 4139.843 kb on + strand, within HP15_3910 at 4139.865 kb on + strand, within HP15_3910 at 4139.865 kb on + strand, within HP15_3910 at 4139.880 kb on + strand, within HP15_3910 at 4139.893 kb on - strand, within HP15_3910 at 4139.977 kb on - strand, within HP15_3910 at 4139.988 kb on + strand, within HP15_3910 at 4139.991 kb on - strand, within HP15_3910
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine as (N) remove 4,137,250 - HP15_3907 0.74 -0.6 4,137,270 - HP15_3907 0.76 +1.9 4,137,391 - HP15_3907 0.85 +2.8 4,137,545 + +0.7 4,137,551 + +1.8 4,137,551 + -0.2 4,137,559 - +1.6 4,137,616 - +2.3 4,137,856 - HP15_3908 0.29 +1.8 4,137,960 + HP15_3908 0.49 -2.2 4,137,976 + HP15_3908 0.53 -0.6 4,137,981 - HP15_3908 0.54 -0.8 4,138,092 - HP15_3908 0.76 +0.2 4,138,093 - HP15_3908 0.76 -0.3 4,138,109 - HP15_3908 0.79 -1.0 4,138,134 - HP15_3908 0.84 -0.1 4,138,141 + HP15_3908 0.85 -1.5 4,138,149 - HP15_3908 0.87 +1.1 4,138,149 - HP15_3908 0.87 +1.8 4,138,171 + +1.8 4,138,209 - +2.3 4,138,403 + HP15_3909 0.19 -1.0 4,138,408 + HP15_3909 0.19 -0.1 4,138,416 - HP15_3909 0.20 +1.7 4,138,416 - HP15_3909 0.20 -2.9 4,138,416 - HP15_3909 0.20 +0.9 4,138,453 - HP15_3909 0.25 -0.3 4,138,485 + HP15_3909 0.29 -0.5 4,138,533 - HP15_3909 0.34 -0.0 4,138,577 + HP15_3909 0.40 -0.7 4,138,687 + HP15_3909 0.53 -0.5 4,138,706 + HP15_3909 0.55 +1.5 4,138,711 + HP15_3909 0.55 -3.7 4,138,714 - HP15_3909 0.56 +1.6 4,138,719 - HP15_3909 0.56 -0.2 4,138,781 - HP15_3909 0.64 +0.3 4,138,836 + HP15_3909 0.70 -0.2 4,138,891 - HP15_3909 0.77 +1.0 4,138,909 - HP15_3909 0.79 -1.0 4,138,962 + HP15_3909 0.85 -0.2 4,139,012 + -2.4 4,139,107 - +2.3 4,139,107 - -0.0 4,139,122 - +0.1 4,139,148 + -0.2 4,139,207 + +1.7 4,139,221 + HP15_3910 0.11 +1.6 4,139,263 + HP15_3910 0.14 +1.6 4,139,263 + HP15_3910 0.14 -1.8 4,139,264 - HP15_3910 0.14 +1.5 4,139,271 - HP15_3910 0.15 +0.3 4,139,365 - HP15_3910 0.23 -1.3 4,139,517 + HP15_3910 0.37 +1.0 4,139,526 - HP15_3910 0.38 -0.2 4,139,648 + HP15_3910 0.49 +1.2 4,139,675 + HP15_3910 0.51 +0.7 4,139,675 + HP15_3910 0.51 -1.5 4,139,683 - HP15_3910 0.52 -0.1 4,139,838 - HP15_3910 0.66 -2.1 4,139,843 + HP15_3910 0.66 +1.6 4,139,865 + HP15_3910 0.68 -0.4 4,139,865 + HP15_3910 0.68 +2.2 4,139,880 + HP15_3910 0.69 -1.4 4,139,893 - HP15_3910 0.70 +0.8 4,139,977 - HP15_3910 0.78 +0.3 4,139,988 + HP15_3910 0.79 -1.1 4,139,991 - HP15_3910 0.79 +0.3
Or see this region's nucleotide sequence