Strain Fitness in Marinobacter adhaerens HP15 around HP15_3815

Experiment: L-Arginine as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_3813 and HP15_3814 are separated by 221 nucleotidesHP15_3814 and HP15_3815 overlap by 1 nucleotidesHP15_3815 and HP15_3816 are separated by 0 nucleotides HP15_3813: HP15_3813 - conserved hypothetical protein, at 4,038,900 to 4,039,433 _3813 HP15_3814: HP15_3814 - ExsB protein, at 4,039,655 to 4,040,284 _3814 HP15_3815: HP15_3815 - organic radical activating enzyme, at 4,040,284 to 4,040,940 _3815 HP15_3816: HP15_3816 - transcriptional regulator, AraC family protein, at 4,040,941 to 4,042,008 _3816 Position (kb) 4040 4041Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4039.323 kb on + strand, within HP15_3813at 4039.323 kb on + strand, within HP15_3813at 4039.331 kb on - strand, within HP15_3813at 4039.366 kb on - strand, within HP15_3813at 4039.390 kb on - strandat 4039.390 kb on - strandat 4039.397 kb on - strandat 4039.421 kb on + strandat 4039.521 kb on + strandat 4039.525 kb on - strandat 4039.652 kb on + strandat 4039.660 kb on + strandat 4039.660 kb on + strandat 4039.668 kb on - strandat 4039.668 kb on - strandat 4039.668 kb on - strandat 4039.695 kb on + strandat 4039.703 kb on + strandat 4039.760 kb on + strand, within HP15_3814at 4039.770 kb on + strand, within HP15_3814at 4039.788 kb on + strand, within HP15_3814at 4039.885 kb on - strand, within HP15_3814at 4040.075 kb on - strand, within HP15_3814at 4040.114 kb on + strand, within HP15_3814at 4040.144 kb on + strand, within HP15_3814at 4040.156 kb on + strand, within HP15_3814at 4040.169 kb on - strand, within HP15_3814at 4040.300 kb on - strandat 4040.319 kb on + strandat 4040.327 kb on - strandat 4040.334 kb on + strandat 4040.342 kb on - strandat 4040.355 kb on - strand, within HP15_3815at 4040.376 kb on + strand, within HP15_3815at 4040.384 kb on - strand, within HP15_3815at 4040.617 kb on - strand, within HP15_3815at 4040.623 kb on - strand, within HP15_3815at 4040.641 kb on - strand, within HP15_3815at 4040.641 kb on - strand, within HP15_3815at 4040.898 kb on + strandat 4040.908 kb on - strandat 4040.966 kb on + strandat 4040.974 kb on - strandat 4040.976 kb on + strandat 4040.976 kb on + strandat 4040.984 kb on - strandat 4041.093 kb on + strand, within HP15_3816at 4041.104 kb on + strand, within HP15_3816at 4041.197 kb on - strand, within HP15_3816at 4041.222 kb on + strand, within HP15_3816at 4041.222 kb on + strand, within HP15_3816at 4041.335 kb on + strand, within HP15_3816at 4041.485 kb on - strand, within HP15_3816at 4041.556 kb on - strand, within HP15_3816at 4041.595 kb on - strand, within HP15_3816at 4041.651 kb on + strand, within HP15_3816at 4041.711 kb on + strand, within HP15_3816at 4041.711 kb on + strand, within HP15_3816at 4041.711 kb on + strand, within HP15_3816at 4041.711 kb on + strand, within HP15_3816at 4041.719 kb on - strand, within HP15_3816at 4041.719 kb on - strand, within HP15_3816at 4041.719 kb on - strand, within HP15_3816at 4041.719 kb on - strand, within HP15_3816at 4041.739 kb on - strand, within HP15_3816at 4041.739 kb on - strand, within HP15_3816at 4041.777 kb on + strand, within HP15_3816at 4041.813 kb on + strand, within HP15_3816at 4041.817 kb on - strand, within HP15_3816at 4041.849 kb on - strand, within HP15_3816at 4041.849 kb on - strand, within HP15_3816at 4041.882 kb on + strand, within HP15_3816at 4041.882 kb on + strand, within HP15_3816at 4041.882 kb on + strand, within HP15_3816at 4041.882 kb on + strand, within HP15_3816at 4041.887 kb on + strand, within HP15_3816at 4041.923 kb on + strandat 4041.929 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine as (N)
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4,039,323 + HP15_3813 0.79 +0.1
4,039,323 + HP15_3813 0.79 -0.5
4,039,331 - HP15_3813 0.81 +0.3
4,039,366 - HP15_3813 0.87 -0.6
4,039,390 - -1.6
4,039,390 - +1.5
4,039,397 - +2.4
4,039,421 + +0.9
4,039,521 + -0.1
4,039,525 - +2.0
4,039,652 + -0.2
4,039,660 + +0.9
4,039,660 + +2.3
4,039,668 - +0.3
4,039,668 - +2.0
4,039,668 - +0.5
4,039,695 + +1.4
4,039,703 + +1.6
4,039,760 + HP15_3814 0.17 -1.2
4,039,770 + HP15_3814 0.18 +2.8
4,039,788 + HP15_3814 0.21 -0.5
4,039,885 - HP15_3814 0.37 -2.4
4,040,075 - HP15_3814 0.67 -0.8
4,040,114 + HP15_3814 0.73 -2.1
4,040,144 + HP15_3814 0.78 +1.9
4,040,156 + HP15_3814 0.80 -2.4
4,040,169 - HP15_3814 0.82 -1.4
4,040,300 - +0.4
4,040,319 + +1.9
4,040,327 - +1.8
4,040,334 + -1.0
4,040,342 - -0.6
4,040,355 - HP15_3815 0.11 +1.5
4,040,376 + HP15_3815 0.14 +0.3
4,040,384 - HP15_3815 0.15 -1.3
4,040,617 - HP15_3815 0.51 -1.2
4,040,623 - HP15_3815 0.52 +1.3
4,040,641 - HP15_3815 0.54 -0.8
4,040,641 - HP15_3815 0.54 -2.6
4,040,898 + -0.9
4,040,908 - +1.8
4,040,966 + -0.7
4,040,974 - -0.0
4,040,976 + -0.7
4,040,976 + +1.8
4,040,984 - +0.5
4,041,093 + HP15_3816 0.14 -0.5
4,041,104 + HP15_3816 0.15 -1.3
4,041,197 - HP15_3816 0.24 +0.0
4,041,222 + HP15_3816 0.26 +1.6
4,041,222 + HP15_3816 0.26 +0.5
4,041,335 + HP15_3816 0.37 -0.2
4,041,485 - HP15_3816 0.51 -0.3
4,041,556 - HP15_3816 0.58 +1.6
4,041,595 - HP15_3816 0.61 -0.1
4,041,651 + HP15_3816 0.66 -1.0
4,041,711 + HP15_3816 0.72 -0.9
4,041,711 + HP15_3816 0.72 -1.3
4,041,711 + HP15_3816 0.72 -0.4
4,041,711 + HP15_3816 0.72 -0.6
4,041,719 - HP15_3816 0.73 -2.7
4,041,719 - HP15_3816 0.73 +0.4
4,041,719 - HP15_3816 0.73 -0.5
4,041,719 - HP15_3816 0.73 +2.5
4,041,739 - HP15_3816 0.75 +1.6
4,041,739 - HP15_3816 0.75 -0.2
4,041,777 + HP15_3816 0.78 -0.0
4,041,813 + HP15_3816 0.82 +2.1
4,041,817 - HP15_3816 0.82 +2.2
4,041,849 - HP15_3816 0.85 -0.6
4,041,849 - HP15_3816 0.85 -1.5
4,041,882 + HP15_3816 0.88 +1.5
4,041,882 + HP15_3816 0.88 -0.3
4,041,882 + HP15_3816 0.88 +1.7
4,041,882 + HP15_3816 0.88 -0.2
4,041,887 + HP15_3816 0.89 +0.0
4,041,923 + +0.5
4,041,929 + +0.2

Or see this region's nucleotide sequence