Experiment: L-Arginine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3813 and HP15_3814 are separated by 221 nucleotides HP15_3814 and HP15_3815 overlap by 1 nucleotides HP15_3815 and HP15_3816 are separated by 0 nucleotides
HP15_3813: HP15_3813 - conserved hypothetical protein, at 4,038,900 to 4,039,433
_3813
HP15_3814: HP15_3814 - ExsB protein, at 4,039,655 to 4,040,284
_3814
HP15_3815: HP15_3815 - organic radical activating enzyme, at 4,040,284 to 4,040,940
_3815
HP15_3816: HP15_3816 - transcriptional regulator, AraC family protein, at 4,040,941 to 4,042,008
_3816
Position (kb)
4040
4041 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4039.323 kb on + strand, within HP15_3813 at 4039.323 kb on + strand, within HP15_3813 at 4039.331 kb on - strand, within HP15_3813 at 4039.366 kb on - strand, within HP15_3813 at 4039.390 kb on - strand at 4039.390 kb on - strand at 4039.397 kb on - strand at 4039.421 kb on + strand at 4039.521 kb on + strand at 4039.525 kb on - strand at 4039.652 kb on + strand at 4039.660 kb on + strand at 4039.660 kb on + strand at 4039.668 kb on - strand at 4039.668 kb on - strand at 4039.668 kb on - strand at 4039.695 kb on + strand at 4039.703 kb on + strand at 4039.760 kb on + strand, within HP15_3814 at 4039.770 kb on + strand, within HP15_3814 at 4039.788 kb on + strand, within HP15_3814 at 4039.885 kb on - strand, within HP15_3814 at 4040.075 kb on - strand, within HP15_3814 at 4040.114 kb on + strand, within HP15_3814 at 4040.144 kb on + strand, within HP15_3814 at 4040.156 kb on + strand, within HP15_3814 at 4040.169 kb on - strand, within HP15_3814 at 4040.300 kb on - strand at 4040.319 kb on + strand at 4040.327 kb on - strand at 4040.334 kb on + strand at 4040.342 kb on - strand at 4040.355 kb on - strand, within HP15_3815 at 4040.376 kb on + strand, within HP15_3815 at 4040.384 kb on - strand, within HP15_3815 at 4040.617 kb on - strand, within HP15_3815 at 4040.623 kb on - strand, within HP15_3815 at 4040.641 kb on - strand, within HP15_3815 at 4040.641 kb on - strand, within HP15_3815 at 4040.898 kb on + strand at 4040.908 kb on - strand at 4040.966 kb on + strand at 4040.974 kb on - strand at 4040.976 kb on + strand at 4040.976 kb on + strand at 4040.984 kb on - strand at 4041.093 kb on + strand, within HP15_3816 at 4041.104 kb on + strand, within HP15_3816 at 4041.197 kb on - strand, within HP15_3816 at 4041.222 kb on + strand, within HP15_3816 at 4041.222 kb on + strand, within HP15_3816 at 4041.335 kb on + strand, within HP15_3816 at 4041.485 kb on - strand, within HP15_3816 at 4041.556 kb on - strand, within HP15_3816 at 4041.595 kb on - strand, within HP15_3816 at 4041.651 kb on + strand, within HP15_3816 at 4041.711 kb on + strand, within HP15_3816 at 4041.711 kb on + strand, within HP15_3816 at 4041.711 kb on + strand, within HP15_3816 at 4041.711 kb on + strand, within HP15_3816 at 4041.719 kb on - strand, within HP15_3816 at 4041.719 kb on - strand, within HP15_3816 at 4041.719 kb on - strand, within HP15_3816 at 4041.719 kb on - strand, within HP15_3816 at 4041.739 kb on - strand, within HP15_3816 at 4041.739 kb on - strand, within HP15_3816 at 4041.777 kb on + strand, within HP15_3816 at 4041.813 kb on + strand, within HP15_3816 at 4041.817 kb on - strand, within HP15_3816 at 4041.849 kb on - strand, within HP15_3816 at 4041.849 kb on - strand, within HP15_3816 at 4041.882 kb on + strand, within HP15_3816 at 4041.882 kb on + strand, within HP15_3816 at 4041.882 kb on + strand, within HP15_3816 at 4041.882 kb on + strand, within HP15_3816 at 4041.887 kb on + strand, within HP15_3816 at 4041.923 kb on + strand at 4041.929 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine as (N) remove 4,039,323 + HP15_3813 0.79 +0.1 4,039,323 + HP15_3813 0.79 -0.5 4,039,331 - HP15_3813 0.81 +0.3 4,039,366 - HP15_3813 0.87 -0.6 4,039,390 - -1.6 4,039,390 - +1.5 4,039,397 - +2.4 4,039,421 + +0.9 4,039,521 + -0.1 4,039,525 - +2.0 4,039,652 + -0.2 4,039,660 + +0.9 4,039,660 + +2.3 4,039,668 - +0.3 4,039,668 - +2.0 4,039,668 - +0.5 4,039,695 + +1.4 4,039,703 + +1.6 4,039,760 + HP15_3814 0.17 -1.2 4,039,770 + HP15_3814 0.18 +2.8 4,039,788 + HP15_3814 0.21 -0.5 4,039,885 - HP15_3814 0.37 -2.4 4,040,075 - HP15_3814 0.67 -0.8 4,040,114 + HP15_3814 0.73 -2.1 4,040,144 + HP15_3814 0.78 +1.9 4,040,156 + HP15_3814 0.80 -2.4 4,040,169 - HP15_3814 0.82 -1.4 4,040,300 - +0.4 4,040,319 + +1.9 4,040,327 - +1.8 4,040,334 + -1.0 4,040,342 - -0.6 4,040,355 - HP15_3815 0.11 +1.5 4,040,376 + HP15_3815 0.14 +0.3 4,040,384 - HP15_3815 0.15 -1.3 4,040,617 - HP15_3815 0.51 -1.2 4,040,623 - HP15_3815 0.52 +1.3 4,040,641 - HP15_3815 0.54 -0.8 4,040,641 - HP15_3815 0.54 -2.6 4,040,898 + -0.9 4,040,908 - +1.8 4,040,966 + -0.7 4,040,974 - -0.0 4,040,976 + -0.7 4,040,976 + +1.8 4,040,984 - +0.5 4,041,093 + HP15_3816 0.14 -0.5 4,041,104 + HP15_3816 0.15 -1.3 4,041,197 - HP15_3816 0.24 +0.0 4,041,222 + HP15_3816 0.26 +1.6 4,041,222 + HP15_3816 0.26 +0.5 4,041,335 + HP15_3816 0.37 -0.2 4,041,485 - HP15_3816 0.51 -0.3 4,041,556 - HP15_3816 0.58 +1.6 4,041,595 - HP15_3816 0.61 -0.1 4,041,651 + HP15_3816 0.66 -1.0 4,041,711 + HP15_3816 0.72 -0.9 4,041,711 + HP15_3816 0.72 -1.3 4,041,711 + HP15_3816 0.72 -0.4 4,041,711 + HP15_3816 0.72 -0.6 4,041,719 - HP15_3816 0.73 -2.7 4,041,719 - HP15_3816 0.73 +0.4 4,041,719 - HP15_3816 0.73 -0.5 4,041,719 - HP15_3816 0.73 +2.5 4,041,739 - HP15_3816 0.75 +1.6 4,041,739 - HP15_3816 0.75 -0.2 4,041,777 + HP15_3816 0.78 -0.0 4,041,813 + HP15_3816 0.82 +2.1 4,041,817 - HP15_3816 0.82 +2.2 4,041,849 - HP15_3816 0.85 -0.6 4,041,849 - HP15_3816 0.85 -1.5 4,041,882 + HP15_3816 0.88 +1.5 4,041,882 + HP15_3816 0.88 -0.3 4,041,882 + HP15_3816 0.88 +1.7 4,041,882 + HP15_3816 0.88 -0.2 4,041,887 + HP15_3816 0.89 +0.0 4,041,923 + +0.5 4,041,929 + +0.2
Or see this region's nucleotide sequence