Experiment: L-Arginine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3639 and HP15_3640 are separated by 418 nucleotides HP15_3640 and HP15_3641 are separated by 353 nucleotides HP15_3641 and HP15_3642 are separated by 97 nucleotides
HP15_3639: HP15_3639 - tetratricopeptide repeat protein-like protein, at 3,833,523 to 3,834,347
_3639
HP15_3640: HP15_3640 - conserved hypothetical protein, RES superfamily, at 3,834,766 to 3,835,290
_3640
HP15_3641: HP15_3641 - hypothetical protein, at 3,835,644 to 3,835,847
_3641
HP15_3642: HP15_3642 - hypothetical protein, at 3,835,945 to 3,836,061
_3642
Position (kb)
3834
3835
3836 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3833.875 kb on + strand, within HP15_3639 at 3834.195 kb on + strand, within HP15_3639 at 3834.364 kb on + strand at 3834.364 kb on + strand at 3834.364 kb on + strand at 3834.364 kb on + strand at 3834.364 kb on + strand at 3834.364 kb on + strand at 3834.364 kb on + strand at 3834.372 kb on - strand at 3834.372 kb on - strand at 3834.372 kb on - strand at 3834.372 kb on - strand at 3834.374 kb on + strand at 3834.387 kb on + strand at 3834.439 kb on - strand at 3834.452 kb on + strand at 3834.460 kb on - strand at 3834.542 kb on + strand at 3834.575 kb on - strand at 3834.581 kb on + strand at 3834.621 kb on + strand at 3834.740 kb on - strand at 3834.765 kb on - strand at 3834.775 kb on + strand at 3834.812 kb on - strand at 3834.847 kb on + strand, within HP15_3640 at 3835.027 kb on - strand, within HP15_3640 at 3835.174 kb on + strand, within HP15_3640 at 3835.256 kb on + strand at 3835.263 kb on + strand at 3835.286 kb on - strand at 3835.291 kb on + strand at 3835.315 kb on + strand at 3835.326 kb on + strand at 3835.341 kb on + strand at 3835.408 kb on + strand at 3835.414 kb on + strand at 3835.470 kb on - strand at 3835.522 kb on + strand at 3835.539 kb on - strand at 3835.551 kb on + strand at 3835.581 kb on + strand at 3835.589 kb on - strand at 3835.603 kb on - strand at 3835.605 kb on + strand at 3835.613 kb on - strand at 3835.721 kb on + strand, within HP15_3641 at 3835.739 kb on - strand, within HP15_3641 at 3835.861 kb on + strand at 3835.861 kb on + strand at 3835.861 kb on + strand at 3835.861 kb on + strand at 3835.867 kb on + strand at 3835.869 kb on - strand at 3835.869 kb on - strand at 3835.936 kb on + strand at 3835.944 kb on - strand at 3835.982 kb on + strand, within HP15_3642 at 3836.052 kb on + strand at 3836.052 kb on + strand at 3836.100 kb on - strand at 3836.132 kb on + strand at 3836.134 kb on + strand at 3836.140 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine as (N) remove 3,833,875 + HP15_3639 0.43 +2.6 3,834,195 + HP15_3639 0.81 +1.9 3,834,364 + -0.6 3,834,364 + -0.2 3,834,364 + -0.7 3,834,364 + -0.3 3,834,364 + +1.8 3,834,364 + +1.9 3,834,364 + -1.5 3,834,372 - -0.4 3,834,372 - -0.7 3,834,372 - +1.8 3,834,372 - -1.1 3,834,374 + +0.4 3,834,387 + +1.8 3,834,439 - -0.7 3,834,452 + -0.8 3,834,460 - +1.8 3,834,542 + -1.0 3,834,575 - +1.9 3,834,581 + +1.1 3,834,621 + -0.1 3,834,740 - -0.3 3,834,765 - +1.9 3,834,775 + +0.4 3,834,812 - +0.3 3,834,847 + HP15_3640 0.15 +0.1 3,835,027 - HP15_3640 0.50 +2.1 3,835,174 + HP15_3640 0.78 +1.6 3,835,256 + +1.8 3,835,263 + -0.6 3,835,286 - -0.7 3,835,291 + -0.8 3,835,315 + -0.2 3,835,326 + -0.4 3,835,341 + -0.4 3,835,408 + +1.9 3,835,414 + -0.6 3,835,470 - -0.0 3,835,522 + -0.2 3,835,539 - +0.2 3,835,551 + -0.7 3,835,581 + +0.9 3,835,589 - +1.9 3,835,603 - +2.2 3,835,605 + -0.5 3,835,613 - +2.2 3,835,721 + HP15_3641 0.38 +2.1 3,835,739 - HP15_3641 0.47 -1.8 3,835,861 + -0.3 3,835,861 + +0.6 3,835,861 + +2.2 3,835,861 + -1.0 3,835,867 + -3.1 3,835,869 - +1.8 3,835,869 - -2.4 3,835,936 + -0.1 3,835,944 - +1.2 3,835,982 + HP15_3642 0.32 -1.0 3,836,052 + +2.0 3,836,052 + -0.9 3,836,100 - -1.2 3,836,132 + -0.4 3,836,134 + +0.3 3,836,140 - +0.0
Or see this region's nucleotide sequence