Experiment: L-Arginine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3579 and HP15_3580 are separated by 22 nucleotides HP15_3580 and HP15_3581 are separated by 28 nucleotides HP15_3581 and HP15_3582 are separated by 14 nucleotides HP15_3582 and HP15_3583 overlap by 1 nucleotides
HP15_3579: HP15_3579 - protein containing uncharacterized protein family UPF0066 domains, at 3,770,950 to 3,771,453
_3579
HP15_3580: HP15_3580 - molybdenum ABC transporter-like protein, periplasmic binding protein, at 3,771,476 to 3,772,267
_3580
HP15_3581: HP15_3581 - iron ABC transporter periplasmic binding protein, at 3,772,296 to 3,773,306
_3581
HP15_3582: HP15_3582 - transport system permease protein, at 3,773,321 to 3,774,301
_3582
HP15_3583: HP15_3583 - iron compound ABC transporter, ATP-binding protein, at 3,774,301 to 3,775,089
_3583
Position (kb)
3772
3773
3774 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3771.367 kb on - strand, within HP15_3579 at 3771.498 kb on + strand at 3771.498 kb on + strand at 3771.503 kb on + strand at 3771.506 kb on - strand at 3771.506 kb on - strand at 3771.655 kb on - strand, within HP15_3580 at 3771.691 kb on - strand, within HP15_3580 at 3771.715 kb on + strand, within HP15_3580 at 3771.723 kb on - strand, within HP15_3580 at 3771.723 kb on - strand, within HP15_3580 at 3771.765 kb on + strand, within HP15_3580 at 3771.800 kb on - strand, within HP15_3580 at 3771.800 kb on - strand, within HP15_3580 at 3771.836 kb on - strand, within HP15_3580 at 3771.966 kb on - strand, within HP15_3580 at 3771.975 kb on + strand, within HP15_3580 at 3772.013 kb on + strand, within HP15_3580 at 3772.021 kb on - strand, within HP15_3580 at 3772.025 kb on + strand, within HP15_3580 at 3772.064 kb on + strand, within HP15_3580 at 3772.064 kb on + strand, within HP15_3580 at 3772.064 kb on + strand, within HP15_3580 at 3772.079 kb on + strand, within HP15_3580 at 3772.118 kb on + strand, within HP15_3580 at 3772.253 kb on + strand at 3772.253 kb on + strand at 3772.299 kb on - strand at 3772.299 kb on - strand at 3772.335 kb on + strand at 3772.335 kb on + strand at 3772.335 kb on + strand at 3772.343 kb on - strand at 3772.343 kb on - strand at 3772.343 kb on - strand at 3772.343 kb on - strand at 3772.454 kb on + strand, within HP15_3581 at 3772.499 kb on - strand, within HP15_3581 at 3772.579 kb on - strand, within HP15_3581 at 3772.623 kb on - strand, within HP15_3581 at 3772.806 kb on + strand, within HP15_3581 at 3772.808 kb on + strand, within HP15_3581 at 3772.823 kb on + strand, within HP15_3581 at 3772.823 kb on + strand, within HP15_3581 at 3772.823 kb on + strand, within HP15_3581 at 3772.824 kb on + strand, within HP15_3581 at 3772.831 kb on - strand, within HP15_3581 at 3772.831 kb on - strand, within HP15_3581 at 3772.831 kb on - strand, within HP15_3581 at 3772.831 kb on - strand, within HP15_3581 at 3772.831 kb on - strand, within HP15_3581 at 3772.831 kb on - strand, within HP15_3581 at 3772.841 kb on - strand, within HP15_3581 at 3772.948 kb on + strand, within HP15_3581 at 3772.966 kb on - strand, within HP15_3581 at 3772.966 kb on - strand, within HP15_3581 at 3773.039 kb on - strand, within HP15_3581 at 3773.174 kb on - strand, within HP15_3581 at 3773.269 kb on + strand at 3773.269 kb on + strand at 3773.296 kb on + strand at 3773.334 kb on + strand at 3773.334 kb on + strand at 3773.339 kb on + strand at 3773.339 kb on + strand at 3773.342 kb on - strand at 3773.342 kb on - strand at 3773.342 kb on - strand at 3773.347 kb on - strand at 3773.347 kb on - strand at 3773.360 kb on - strand at 3773.397 kb on + strand at 3773.437 kb on + strand, within HP15_3582 at 3773.437 kb on + strand, within HP15_3582 at 3773.714 kb on - strand, within HP15_3582 at 3773.721 kb on + strand, within HP15_3582 at 3773.794 kb on + strand, within HP15_3582 at 3773.800 kb on + strand, within HP15_3582 at 3773.808 kb on - strand, within HP15_3582 at 3773.839 kb on - strand, within HP15_3582 at 3773.864 kb on + strand, within HP15_3582 at 3773.958 kb on + strand, within HP15_3582 at 3773.966 kb on - strand, within HP15_3582 at 3773.966 kb on - strand, within HP15_3582 at 3774.069 kb on - strand, within HP15_3582 at 3774.078 kb on - strand, within HP15_3582 at 3774.157 kb on + strand, within HP15_3582
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine as (N) remove 3,771,367 - HP15_3579 0.83 -0.1 3,771,498 + +0.1 3,771,498 + +0.1 3,771,503 + -0.7 3,771,506 - -0.7 3,771,506 - +2.3 3,771,655 - HP15_3580 0.23 -0.6 3,771,691 - HP15_3580 0.27 +1.8 3,771,715 + HP15_3580 0.30 +1.6 3,771,723 - HP15_3580 0.31 -0.3 3,771,723 - HP15_3580 0.31 +2.2 3,771,765 + HP15_3580 0.36 +1.3 3,771,800 - HP15_3580 0.41 +1.7 3,771,800 - HP15_3580 0.41 -2.0 3,771,836 - HP15_3580 0.45 -0.6 3,771,966 - HP15_3580 0.62 -2.4 3,771,975 + HP15_3580 0.63 -0.2 3,772,013 + HP15_3580 0.68 +2.7 3,772,021 - HP15_3580 0.69 +0.1 3,772,025 + HP15_3580 0.69 -2.2 3,772,064 + HP15_3580 0.74 +2.0 3,772,064 + HP15_3580 0.74 -0.4 3,772,064 + HP15_3580 0.74 -0.5 3,772,079 + HP15_3580 0.76 -0.1 3,772,118 + HP15_3580 0.81 +2.2 3,772,253 + +2.1 3,772,253 + -1.0 3,772,299 - -2.5 3,772,299 - +0.5 3,772,335 + -0.0 3,772,335 + -0.4 3,772,335 + +0.2 3,772,343 - -0.7 3,772,343 - +0.7 3,772,343 - -0.1 3,772,343 - +2.0 3,772,454 + HP15_3581 0.16 +1.0 3,772,499 - HP15_3581 0.20 +0.6 3,772,579 - HP15_3581 0.28 -0.3 3,772,623 - HP15_3581 0.32 +2.0 3,772,806 + HP15_3581 0.50 -1.3 3,772,808 + HP15_3581 0.51 -1.8 3,772,823 + HP15_3581 0.52 -0.6 3,772,823 + HP15_3581 0.52 +2.0 3,772,823 + HP15_3581 0.52 -2.2 3,772,824 + HP15_3581 0.52 -2.3 3,772,831 - HP15_3581 0.53 +2.2 3,772,831 - HP15_3581 0.53 -0.5 3,772,831 - HP15_3581 0.53 -1.3 3,772,831 - HP15_3581 0.53 -0.7 3,772,831 - HP15_3581 0.53 +1.4 3,772,831 - HP15_3581 0.53 -0.8 3,772,841 - HP15_3581 0.54 -1.7 3,772,948 + HP15_3581 0.64 +0.3 3,772,966 - HP15_3581 0.66 -0.8 3,772,966 - HP15_3581 0.66 -0.1 3,773,039 - HP15_3581 0.73 -2.8 3,773,174 - HP15_3581 0.87 +0.5 3,773,269 + +0.3 3,773,269 + +0.1 3,773,296 + -1.9 3,773,334 + -0.5 3,773,334 + -3.2 3,773,339 + +1.5 3,773,339 + +1.9 3,773,342 - +0.2 3,773,342 - -0.0 3,773,342 - -0.8 3,773,347 - -0.4 3,773,347 - +0.3 3,773,360 - +1.3 3,773,397 + -0.8 3,773,437 + HP15_3582 0.12 +2.5 3,773,437 + HP15_3582 0.12 -1.4 3,773,714 - HP15_3582 0.40 +1.6 3,773,721 + HP15_3582 0.41 +1.5 3,773,794 + HP15_3582 0.48 +1.9 3,773,800 + HP15_3582 0.49 -1.1 3,773,808 - HP15_3582 0.50 -1.0 3,773,839 - HP15_3582 0.53 -0.9 3,773,864 + HP15_3582 0.55 -0.1 3,773,958 + HP15_3582 0.65 +1.3 3,773,966 - HP15_3582 0.66 -0.7 3,773,966 - HP15_3582 0.66 -1.6 3,774,069 - HP15_3582 0.76 -2.0 3,774,078 - HP15_3582 0.77 +0.6 3,774,157 + HP15_3582 0.85 +1.7
Or see this region's nucleotide sequence