Strain Fitness in Marinobacter adhaerens HP15 around HP15_3581

Experiment: L-Arginine as (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHP15_3579 and HP15_3580 are separated by 22 nucleotidesHP15_3580 and HP15_3581 are separated by 28 nucleotidesHP15_3581 and HP15_3582 are separated by 14 nucleotidesHP15_3582 and HP15_3583 overlap by 1 nucleotides HP15_3579: HP15_3579 - protein containing uncharacterized protein family UPF0066 domains, at 3,770,950 to 3,771,453 _3579 HP15_3580: HP15_3580 - molybdenum ABC transporter-like protein, periplasmic binding protein, at 3,771,476 to 3,772,267 _3580 HP15_3581: HP15_3581 - iron ABC transporter periplasmic binding protein, at 3,772,296 to 3,773,306 _3581 HP15_3582: HP15_3582 - transport system permease protein, at 3,773,321 to 3,774,301 _3582 HP15_3583: HP15_3583 - iron compound ABC transporter, ATP-binding protein, at 3,774,301 to 3,775,089 _3583 Position (kb) 3772 3773 3774Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3771.367 kb on - strand, within HP15_3579at 3771.498 kb on + strandat 3771.498 kb on + strandat 3771.503 kb on + strandat 3771.506 kb on - strandat 3771.506 kb on - strandat 3771.655 kb on - strand, within HP15_3580at 3771.691 kb on - strand, within HP15_3580at 3771.715 kb on + strand, within HP15_3580at 3771.723 kb on - strand, within HP15_3580at 3771.723 kb on - strand, within HP15_3580at 3771.765 kb on + strand, within HP15_3580at 3771.800 kb on - strand, within HP15_3580at 3771.800 kb on - strand, within HP15_3580at 3771.836 kb on - strand, within HP15_3580at 3771.966 kb on - strand, within HP15_3580at 3771.975 kb on + strand, within HP15_3580at 3772.013 kb on + strand, within HP15_3580at 3772.021 kb on - strand, within HP15_3580at 3772.025 kb on + strand, within HP15_3580at 3772.064 kb on + strand, within HP15_3580at 3772.064 kb on + strand, within HP15_3580at 3772.064 kb on + strand, within HP15_3580at 3772.079 kb on + strand, within HP15_3580at 3772.118 kb on + strand, within HP15_3580at 3772.253 kb on + strandat 3772.253 kb on + strandat 3772.299 kb on - strandat 3772.299 kb on - strandat 3772.335 kb on + strandat 3772.335 kb on + strandat 3772.335 kb on + strandat 3772.343 kb on - strandat 3772.343 kb on - strandat 3772.343 kb on - strandat 3772.343 kb on - strandat 3772.454 kb on + strand, within HP15_3581at 3772.499 kb on - strand, within HP15_3581at 3772.579 kb on - strand, within HP15_3581at 3772.623 kb on - strand, within HP15_3581at 3772.806 kb on + strand, within HP15_3581at 3772.808 kb on + strand, within HP15_3581at 3772.823 kb on + strand, within HP15_3581at 3772.823 kb on + strand, within HP15_3581at 3772.823 kb on + strand, within HP15_3581at 3772.824 kb on + strand, within HP15_3581at 3772.831 kb on - strand, within HP15_3581at 3772.831 kb on - strand, within HP15_3581at 3772.831 kb on - strand, within HP15_3581at 3772.831 kb on - strand, within HP15_3581at 3772.831 kb on - strand, within HP15_3581at 3772.831 kb on - strand, within HP15_3581at 3772.841 kb on - strand, within HP15_3581at 3772.948 kb on + strand, within HP15_3581at 3772.966 kb on - strand, within HP15_3581at 3772.966 kb on - strand, within HP15_3581at 3773.039 kb on - strand, within HP15_3581at 3773.174 kb on - strand, within HP15_3581at 3773.269 kb on + strandat 3773.269 kb on + strandat 3773.296 kb on + strandat 3773.334 kb on + strandat 3773.334 kb on + strandat 3773.339 kb on + strandat 3773.339 kb on + strandat 3773.342 kb on - strandat 3773.342 kb on - strandat 3773.342 kb on - strandat 3773.347 kb on - strandat 3773.347 kb on - strandat 3773.360 kb on - strandat 3773.397 kb on + strandat 3773.437 kb on + strand, within HP15_3582at 3773.437 kb on + strand, within HP15_3582at 3773.714 kb on - strand, within HP15_3582at 3773.721 kb on + strand, within HP15_3582at 3773.794 kb on + strand, within HP15_3582at 3773.800 kb on + strand, within HP15_3582at 3773.808 kb on - strand, within HP15_3582at 3773.839 kb on - strand, within HP15_3582at 3773.864 kb on + strand, within HP15_3582at 3773.958 kb on + strand, within HP15_3582at 3773.966 kb on - strand, within HP15_3582at 3773.966 kb on - strand, within HP15_3582at 3774.069 kb on - strand, within HP15_3582at 3774.078 kb on - strand, within HP15_3582at 3774.157 kb on + strand, within HP15_3582

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine as (N)
remove
3,771,367 - HP15_3579 0.83 -0.1
3,771,498 + +0.1
3,771,498 + +0.1
3,771,503 + -0.7
3,771,506 - -0.7
3,771,506 - +2.3
3,771,655 - HP15_3580 0.23 -0.6
3,771,691 - HP15_3580 0.27 +1.8
3,771,715 + HP15_3580 0.30 +1.6
3,771,723 - HP15_3580 0.31 -0.3
3,771,723 - HP15_3580 0.31 +2.2
3,771,765 + HP15_3580 0.36 +1.3
3,771,800 - HP15_3580 0.41 +1.7
3,771,800 - HP15_3580 0.41 -2.0
3,771,836 - HP15_3580 0.45 -0.6
3,771,966 - HP15_3580 0.62 -2.4
3,771,975 + HP15_3580 0.63 -0.2
3,772,013 + HP15_3580 0.68 +2.7
3,772,021 - HP15_3580 0.69 +0.1
3,772,025 + HP15_3580 0.69 -2.2
3,772,064 + HP15_3580 0.74 +2.0
3,772,064 + HP15_3580 0.74 -0.4
3,772,064 + HP15_3580 0.74 -0.5
3,772,079 + HP15_3580 0.76 -0.1
3,772,118 + HP15_3580 0.81 +2.2
3,772,253 + +2.1
3,772,253 + -1.0
3,772,299 - -2.5
3,772,299 - +0.5
3,772,335 + -0.0
3,772,335 + -0.4
3,772,335 + +0.2
3,772,343 - -0.7
3,772,343 - +0.7
3,772,343 - -0.1
3,772,343 - +2.0
3,772,454 + HP15_3581 0.16 +1.0
3,772,499 - HP15_3581 0.20 +0.6
3,772,579 - HP15_3581 0.28 -0.3
3,772,623 - HP15_3581 0.32 +2.0
3,772,806 + HP15_3581 0.50 -1.3
3,772,808 + HP15_3581 0.51 -1.8
3,772,823 + HP15_3581 0.52 -0.6
3,772,823 + HP15_3581 0.52 +2.0
3,772,823 + HP15_3581 0.52 -2.2
3,772,824 + HP15_3581 0.52 -2.3
3,772,831 - HP15_3581 0.53 +2.2
3,772,831 - HP15_3581 0.53 -0.5
3,772,831 - HP15_3581 0.53 -1.3
3,772,831 - HP15_3581 0.53 -0.7
3,772,831 - HP15_3581 0.53 +1.4
3,772,831 - HP15_3581 0.53 -0.8
3,772,841 - HP15_3581 0.54 -1.7
3,772,948 + HP15_3581 0.64 +0.3
3,772,966 - HP15_3581 0.66 -0.8
3,772,966 - HP15_3581 0.66 -0.1
3,773,039 - HP15_3581 0.73 -2.8
3,773,174 - HP15_3581 0.87 +0.5
3,773,269 + +0.3
3,773,269 + +0.1
3,773,296 + -1.9
3,773,334 + -0.5
3,773,334 + -3.2
3,773,339 + +1.5
3,773,339 + +1.9
3,773,342 - +0.2
3,773,342 - -0.0
3,773,342 - -0.8
3,773,347 - -0.4
3,773,347 - +0.3
3,773,360 - +1.3
3,773,397 + -0.8
3,773,437 + HP15_3582 0.12 +2.5
3,773,437 + HP15_3582 0.12 -1.4
3,773,714 - HP15_3582 0.40 +1.6
3,773,721 + HP15_3582 0.41 +1.5
3,773,794 + HP15_3582 0.48 +1.9
3,773,800 + HP15_3582 0.49 -1.1
3,773,808 - HP15_3582 0.50 -1.0
3,773,839 - HP15_3582 0.53 -0.9
3,773,864 + HP15_3582 0.55 -0.1
3,773,958 + HP15_3582 0.65 +1.3
3,773,966 - HP15_3582 0.66 -0.7
3,773,966 - HP15_3582 0.66 -1.6
3,774,069 - HP15_3582 0.76 -2.0
3,774,078 - HP15_3582 0.77 +0.6
3,774,157 + HP15_3582 0.85 +1.7

Or see this region's nucleotide sequence