Experiment: L-Arginine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3047 and HP15_3048 are separated by 56 nucleotides HP15_3048 and HP15_3049 are separated by 63 nucleotides HP15_3049 and HP15_3051 are separated by 85 nucleotides HP15_3051 and HP15_3050 overlap by 26 nucleotides HP15_3050 and HP15_3052 are separated by 104 nucleotides
HP15_3047: HP15_3047 - lysine 2,3-aminomutase-like protein, at 3,198,365 to 3,199,729
_3047
HP15_3048: HP15_3048 - membrane protein, at 3,199,786 to 3,200,019
_3048
HP15_3049: HP15_3049 - conserved hypothetical protein, at 3,200,083 to 3,200,409
_3049
HP15_3051: HP15_3051 - thioredoxin domain-containing protein, at 3,200,495 to 3,201,358
_3051
HP15_3050: HP15_3050 - hypothetical protein, at 3,201,333 to 3,201,446
_3050
HP15_3052: HP15_3052 - ATP-dependent protease La-like protein, at 3,201,551 to 3,204,016
_3052
Position (kb)
3200
3201
3202 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3199.551 kb on + strand, within HP15_3047 at 3199.551 kb on + strand, within HP15_3047 at 3199.573 kb on - strand, within HP15_3047 at 3199.609 kb on - strand at 3199.736 kb on + strand at 3199.838 kb on + strand, within HP15_3048 at 3199.846 kb on - strand, within HP15_3048 at 3199.846 kb on - strand, within HP15_3048 at 3199.891 kb on + strand, within HP15_3048 at 3199.906 kb on - strand, within HP15_3048 at 3199.967 kb on - strand, within HP15_3048 at 3200.115 kb on + strand at 3200.121 kb on - strand, within HP15_3049 at 3200.123 kb on - strand, within HP15_3049 at 3200.123 kb on - strand, within HP15_3049 at 3200.125 kb on + strand, within HP15_3049 at 3200.134 kb on - strand, within HP15_3049 at 3200.191 kb on - strand, within HP15_3049 at 3200.204 kb on - strand, within HP15_3049 at 3200.243 kb on + strand, within HP15_3049 at 3200.244 kb on - strand, within HP15_3049 at 3200.253 kb on + strand, within HP15_3049 at 3200.261 kb on - strand, within HP15_3049 at 3200.277 kb on - strand, within HP15_3049 at 3200.341 kb on - strand, within HP15_3049 at 3200.381 kb on - strand at 3200.508 kb on + strand at 3200.516 kb on - strand at 3200.536 kb on - strand at 3200.547 kb on + strand at 3200.555 kb on - strand at 3200.586 kb on - strand, within HP15_3051 at 3200.591 kb on - strand, within HP15_3051 at 3200.591 kb on - strand, within HP15_3051 at 3200.591 kb on - strand, within HP15_3051 at 3200.601 kb on - strand, within HP15_3051 at 3200.670 kb on - strand, within HP15_3051 at 3200.717 kb on - strand, within HP15_3051 at 3200.773 kb on - strand, within HP15_3051 at 3200.805 kb on - strand, within HP15_3051 at 3200.824 kb on - strand, within HP15_3051 at 3200.827 kb on + strand, within HP15_3051 at 3200.953 kb on + strand, within HP15_3051 at 3200.965 kb on - strand, within HP15_3051 at 3201.032 kb on + strand, within HP15_3051 at 3201.040 kb on - strand, within HP15_3051 at 3201.040 kb on - strand, within HP15_3051 at 3201.069 kb on + strand, within HP15_3051 at 3201.077 kb on - strand, within HP15_3051 at 3201.125 kb on + strand, within HP15_3051 at 3201.130 kb on + strand, within HP15_3051 at 3201.130 kb on + strand, within HP15_3051 at 3201.130 kb on + strand, within HP15_3051 at 3201.136 kb on + strand, within HP15_3051 at 3201.138 kb on - strand, within HP15_3051 at 3201.149 kb on - strand, within HP15_3051 at 3201.173 kb on - strand, within HP15_3051 at 3201.203 kb on - strand, within HP15_3051 at 3201.224 kb on + strand, within HP15_3051 at 3201.225 kb on + strand, within HP15_3051 at 3201.248 kb on + strand, within HP15_3051 at 3201.651 kb on + strand at 3201.651 kb on + strand at 3201.651 kb on + strand at 3201.659 kb on - strand at 3201.659 kb on - strand at 3201.659 kb on - strand at 3201.659 kb on - strand at 3201.709 kb on - strand at 3201.758 kb on - strand at 3201.771 kb on + strand at 3201.810 kb on - strand, within HP15_3052 at 3201.871 kb on - strand, within HP15_3052 at 3201.904 kb on - strand, within HP15_3052 at 3201.922 kb on + strand, within HP15_3052 at 3202.034 kb on + strand, within HP15_3052 at 3202.046 kb on + strand, within HP15_3052 at 3202.054 kb on - strand, within HP15_3052 at 3202.127 kb on - strand, within HP15_3052 at 3202.152 kb on - strand, within HP15_3052 at 3202.224 kb on + strand, within HP15_3052 at 3202.267 kb on + strand, within HP15_3052 at 3202.315 kb on + strand, within HP15_3052
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine as (N) remove 3,199,551 + HP15_3047 0.87 +0.1 3,199,551 + HP15_3047 0.87 +0.0 3,199,573 - HP15_3047 0.88 +0.1 3,199,609 - +2.4 3,199,736 + -1.2 3,199,838 + HP15_3048 0.22 -0.9 3,199,846 - HP15_3048 0.26 -1.6 3,199,846 - HP15_3048 0.26 +2.4 3,199,891 + HP15_3048 0.45 +1.9 3,199,906 - HP15_3048 0.51 -1.4 3,199,967 - HP15_3048 0.77 -0.2 3,200,115 + -0.5 3,200,121 - HP15_3049 0.12 +1.8 3,200,123 - HP15_3049 0.12 +0.3 3,200,123 - HP15_3049 0.12 +1.0 3,200,125 + HP15_3049 0.13 +1.3 3,200,134 - HP15_3049 0.16 -2.3 3,200,191 - HP15_3049 0.33 +0.1 3,200,204 - HP15_3049 0.37 +2.3 3,200,243 + HP15_3049 0.49 +0.7 3,200,244 - HP15_3049 0.49 +1.4 3,200,253 + HP15_3049 0.52 +2.3 3,200,261 - HP15_3049 0.54 -0.5 3,200,277 - HP15_3049 0.59 +0.5 3,200,341 - HP15_3049 0.79 +0.5 3,200,381 - +1.5 3,200,508 + +2.4 3,200,516 - -2.8 3,200,536 - +1.9 3,200,547 + +0.9 3,200,555 - -0.6 3,200,586 - HP15_3051 0.11 -2.9 3,200,591 - HP15_3051 0.11 +1.5 3,200,591 - HP15_3051 0.11 +0.5 3,200,591 - HP15_3051 0.11 +0.6 3,200,601 - HP15_3051 0.12 +2.0 3,200,670 - HP15_3051 0.20 -0.9 3,200,717 - HP15_3051 0.26 +0.6 3,200,773 - HP15_3051 0.32 +0.8 3,200,805 - HP15_3051 0.36 +2.3 3,200,824 - HP15_3051 0.38 +0.7 3,200,827 + HP15_3051 0.38 +2.3 3,200,953 + HP15_3051 0.53 +0.8 3,200,965 - HP15_3051 0.54 -0.3 3,201,032 + HP15_3051 0.62 -0.5 3,201,040 - HP15_3051 0.63 -0.5 3,201,040 - HP15_3051 0.63 +1.8 3,201,069 + HP15_3051 0.66 +0.9 3,201,077 - HP15_3051 0.67 +0.4 3,201,125 + HP15_3051 0.73 +2.8 3,201,130 + HP15_3051 0.73 -1.0 3,201,130 + HP15_3051 0.73 +1.6 3,201,130 + HP15_3051 0.73 -1.2 3,201,136 + HP15_3051 0.74 +0.2 3,201,138 - HP15_3051 0.74 -0.4 3,201,149 - HP15_3051 0.76 +2.0 3,201,173 - HP15_3051 0.78 +0.3 3,201,203 - HP15_3051 0.82 -2.0 3,201,224 + HP15_3051 0.84 -1.4 3,201,225 + HP15_3051 0.84 +2.0 3,201,248 + HP15_3051 0.87 +1.0 3,201,651 + +0.2 3,201,651 + +1.1 3,201,651 + -1.5 3,201,659 - +1.9 3,201,659 - -0.5 3,201,659 - -1.9 3,201,659 - +2.6 3,201,709 - +2.0 3,201,758 - +1.7 3,201,771 + +2.3 3,201,810 - HP15_3052 0.11 +1.3 3,201,871 - HP15_3052 0.13 -1.4 3,201,904 - HP15_3052 0.14 -0.5 3,201,922 + HP15_3052 0.15 -1.8 3,202,034 + HP15_3052 0.20 +1.3 3,202,046 + HP15_3052 0.20 +2.5 3,202,054 - HP15_3052 0.20 +2.2 3,202,127 - HP15_3052 0.23 +0.1 3,202,152 - HP15_3052 0.24 +1.4 3,202,224 + HP15_3052 0.27 +1.7 3,202,267 + HP15_3052 0.29 +1.5 3,202,315 + HP15_3052 0.31 +1.4
Or see this region's nucleotide sequence