Strain Fitness in Marinobacter adhaerens HP15 around HP15_2939

Experiment: L-Arginine as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2937 and HP15_2938 overlap by 4 nucleotidesHP15_2938 and HP15_2939 are separated by 156 nucleotidesHP15_2939 and HP15_2940 are separated by 17 nucleotides HP15_2937: HP15_2937 - two component transcriptional regulator, winged helix family, at 3,079,393 to 3,080,064 _2937 HP15_2938: HP15_2938 - propeptide, PepSY amd peptidase M4, at 3,080,061 to 3,080,432 _2938 HP15_2939: HP15_2939 - conserved hypothetical protein, secreted, at 3,080,589 to 3,081,059 _2939 HP15_2940: HP15_2940 - conserved hypothetical protein, at 3,081,077 to 3,082,999 _2940 Position (kb) 3080 3081 3082Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3079.650 kb on - strand, within HP15_2937at 3079.704 kb on - strand, within HP15_2937at 3079.814 kb on - strand, within HP15_2937at 3079.871 kb on + strand, within HP15_2937at 3080.312 kb on - strand, within HP15_2938at 3080.442 kb on - strandat 3080.487 kb on + strandat 3080.572 kb on + strandat 3080.673 kb on + strand, within HP15_2939at 3080.714 kb on + strand, within HP15_2939at 3080.796 kb on - strand, within HP15_2939at 3080.832 kb on - strand, within HP15_2939at 3080.923 kb on + strand, within HP15_2939at 3080.923 kb on + strand, within HP15_2939at 3080.971 kb on + strand, within HP15_2939at 3080.971 kb on + strand, within HP15_2939at 3080.979 kb on - strand, within HP15_2939at 3081.037 kb on - strandat 3081.212 kb on + strandat 3081.212 kb on + strandat 3081.220 kb on - strandat 3081.242 kb on - strandat 3081.242 kb on - strandat 3081.281 kb on - strand, within HP15_2940at 3081.308 kb on - strand, within HP15_2940at 3081.336 kb on + strand, within HP15_2940at 3081.357 kb on + strand, within HP15_2940at 3081.357 kb on + strand, within HP15_2940at 3081.365 kb on - strand, within HP15_2940at 3081.384 kb on - strand, within HP15_2940at 3081.392 kb on + strand, within HP15_2940at 3081.397 kb on + strand, within HP15_2940at 3081.410 kb on - strand, within HP15_2940at 3081.426 kb on + strand, within HP15_2940at 3081.428 kb on - strand, within HP15_2940at 3081.487 kb on + strand, within HP15_2940at 3081.514 kb on - strand, within HP15_2940at 3081.534 kb on - strand, within HP15_2940at 3081.583 kb on + strand, within HP15_2940at 3081.606 kb on + strand, within HP15_2940at 3081.606 kb on + strand, within HP15_2940at 3081.606 kb on + strand, within HP15_2940at 3081.606 kb on + strand, within HP15_2940at 3081.614 kb on - strand, within HP15_2940at 3081.614 kb on - strand, within HP15_2940at 3081.642 kb on + strand, within HP15_2940at 3081.662 kb on + strand, within HP15_2940at 3081.765 kb on - strand, within HP15_2940at 3081.894 kb on - strand, within HP15_2940at 3081.895 kb on - strand, within HP15_2940at 3081.914 kb on - strand, within HP15_2940at 3081.988 kb on + strand, within HP15_2940at 3082.011 kb on - strand, within HP15_2940at 3082.059 kb on + strand, within HP15_2940

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine as (N)
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3,079,650 - HP15_2937 0.38 -0.5
3,079,704 - HP15_2937 0.46 -0.4
3,079,814 - HP15_2937 0.63 -0.3
3,079,871 + HP15_2937 0.71 +0.9
3,080,312 - HP15_2938 0.67 +2.9
3,080,442 - -0.1
3,080,487 + +2.2
3,080,572 + -0.2
3,080,673 + HP15_2939 0.18 +0.7
3,080,714 + HP15_2939 0.27 -0.6
3,080,796 - HP15_2939 0.44 +2.4
3,080,832 - HP15_2939 0.52 -0.3
3,080,923 + HP15_2939 0.71 -0.1
3,080,923 + HP15_2939 0.71 +2.0
3,080,971 + HP15_2939 0.81 -0.2
3,080,971 + HP15_2939 0.81 -0.0
3,080,979 - HP15_2939 0.83 +1.5
3,081,037 - +0.2
3,081,212 + +0.4
3,081,212 + -1.5
3,081,220 - +0.2
3,081,242 - +0.5
3,081,242 - -1.2
3,081,281 - HP15_2940 0.11 -3.3
3,081,308 - HP15_2940 0.12 -1.9
3,081,336 + HP15_2940 0.13 +1.2
3,081,357 + HP15_2940 0.15 +0.1
3,081,357 + HP15_2940 0.15 -0.1
3,081,365 - HP15_2940 0.15 -0.2
3,081,384 - HP15_2940 0.16 -2.8
3,081,392 + HP15_2940 0.16 +1.7
3,081,397 + HP15_2940 0.17 +0.2
3,081,410 - HP15_2940 0.17 -0.9
3,081,426 + HP15_2940 0.18 +0.6
3,081,428 - HP15_2940 0.18 -0.6
3,081,487 + HP15_2940 0.21 +1.6
3,081,514 - HP15_2940 0.23 -0.4
3,081,534 - HP15_2940 0.24 -0.7
3,081,583 + HP15_2940 0.26 -0.4
3,081,606 + HP15_2940 0.28 -0.4
3,081,606 + HP15_2940 0.28 -0.1
3,081,606 + HP15_2940 0.28 -0.9
3,081,606 + HP15_2940 0.28 -0.5
3,081,614 - HP15_2940 0.28 +0.7
3,081,614 - HP15_2940 0.28 +1.9
3,081,642 + HP15_2940 0.29 +2.6
3,081,662 + HP15_2940 0.30 -0.7
3,081,765 - HP15_2940 0.36 +1.9
3,081,894 - HP15_2940 0.42 -1.1
3,081,895 - HP15_2940 0.43 +2.1
3,081,914 - HP15_2940 0.44 -0.3
3,081,988 + HP15_2940 0.47 -0.9
3,082,011 - HP15_2940 0.49 -0.5
3,082,059 + HP15_2940 0.51 -0.1

Or see this region's nucleotide sequence