Strain Fitness in Marinobacter adhaerens HP15 around HP15_2629

Experiment: L-Arginine as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2628 and HP15_2629 are separated by 177 nucleotidesHP15_2629 and HP15_2630 are separated by 232 nucleotidesHP15_2630 and HP15_2631 overlap by 4 nucleotides HP15_2628: HP15_2628 - ABC transporter ATP-binding protein-like protein, at 2,779,102 to 2,780,688 _2628 HP15_2629: HP15_2629 - PpiC-type peptidyl-prolyl cis-trans isomerase, at 2,780,866 to 2,781,150 _2629 HP15_2630: HP15_2630 - succinyl-CoA synthetase, beta subunit, at 2,781,383 to 2,782,090 _2630 HP15_2631: HP15_2631 - Xaa-Pro aminopeptidase, at 2,782,087 to 2,783,268 _2631 Position (kb) 2780 2781 2782Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2779.935 kb on + strand, within HP15_2628at 2779.943 kb on - strand, within HP15_2628at 2780.019 kb on - strand, within HP15_2628at 2780.230 kb on + strand, within HP15_2628at 2780.444 kb on - strand, within HP15_2628at 2780.472 kb on - strand, within HP15_2628at 2780.518 kb on - strand, within HP15_2628at 2780.590 kb on + strandat 2780.754 kb on - strandat 2780.766 kb on + strandat 2780.802 kb on + strandat 2780.812 kb on + strandat 2780.848 kb on - strandat 2780.868 kb on + strandat 2781.013 kb on + strand, within HP15_2629at 2781.031 kb on - strand, within HP15_2629at 2781.124 kb on - strandat 2781.276 kb on - strandat 2781.278 kb on + strandat 2781.278 kb on + strandat 2781.298 kb on - strandat 2781.299 kb on + strandat 2781.408 kb on + strandat 2781.502 kb on + strand, within HP15_2630at 2781.732 kb on + strand, within HP15_2630at 2781.756 kb on + strand, within HP15_2630at 2781.813 kb on + strand, within HP15_2630at 2781.813 kb on + strand, within HP15_2630at 2781.821 kb on - strand, within HP15_2630at 2781.821 kb on - strand, within HP15_2630at 2781.821 kb on - strand, within HP15_2630at 2781.850 kb on - strand, within HP15_2630at 2781.883 kb on - strand, within HP15_2630at 2781.941 kb on + strand, within HP15_2630

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine as (N)
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2,779,935 + HP15_2628 0.52 -3.0
2,779,943 - HP15_2628 0.53 -0.2
2,780,019 - HP15_2628 0.58 -2.2
2,780,230 + HP15_2628 0.71 -1.1
2,780,444 - HP15_2628 0.85 -1.2
2,780,472 - HP15_2628 0.86 -1.4
2,780,518 - HP15_2628 0.89 -1.1
2,780,590 + +2.0
2,780,754 - +0.0
2,780,766 + -1.0
2,780,802 + -0.7
2,780,812 + -0.1
2,780,848 - -0.3
2,780,868 + +0.2
2,781,013 + HP15_2629 0.52 -0.1
2,781,031 - HP15_2629 0.58 -0.6
2,781,124 - -1.3
2,781,276 - -0.7
2,781,278 + +1.5
2,781,278 + +1.7
2,781,298 - +2.3
2,781,299 + +0.3
2,781,408 + -0.4
2,781,502 + HP15_2630 0.17 -0.3
2,781,732 + HP15_2630 0.49 +1.6
2,781,756 + HP15_2630 0.53 +0.0
2,781,813 + HP15_2630 0.61 +0.1
2,781,813 + HP15_2630 0.61 +1.6
2,781,821 - HP15_2630 0.62 +1.3
2,781,821 - HP15_2630 0.62 -1.2
2,781,821 - HP15_2630 0.62 +0.3
2,781,850 - HP15_2630 0.66 +0.2
2,781,883 - HP15_2630 0.71 +0.6
2,781,941 + HP15_2630 0.79 -0.1

Or see this region's nucleotide sequence