Experiment: L-Arginine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2203 and HP15_2204 are separated by 90 nucleotides HP15_2204 and HP15_2205 are separated by 130 nucleotides HP15_2205 and HP15_2206 are separated by 348 nucleotides
HP15_2203: HP15_2203 - bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase, at 2,320,356 to 2,322,950
_2203
HP15_2204: HP15_2204 - membrane protein containing DUF81, at 2,323,041 to 2,323,787
_2204
HP15_2205: HP15_2205 - sodium/solute symporter, at 2,323,918 to 2,325,363
_2205
HP15_2206: HP15_2206 - AraC-type DNA-binding domain-containing protein, at 2,325,712 to 2,326,491
_2206
Position (kb)
2323
2324
2325
2326 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2323.027 kb on + strand at 2323.087 kb on - strand at 2323.094 kb on - strand at 2323.174 kb on - strand, within HP15_2204 at 2323.536 kb on + strand, within HP15_2204 at 2323.613 kb on - strand, within HP15_2204 at 2323.613 kb on - strand, within HP15_2204 at 2323.791 kb on + strand at 2323.879 kb on + strand at 2324.019 kb on + strand at 2324.027 kb on - strand at 2324.044 kb on + strand at 2324.397 kb on - strand, within HP15_2205 at 2324.621 kb on + strand, within HP15_2205 at 2324.636 kb on + strand, within HP15_2205 at 2324.636 kb on + strand, within HP15_2205 at 2324.644 kb on - strand, within HP15_2205 at 2324.706 kb on - strand, within HP15_2205 at 2324.750 kb on - strand, within HP15_2205 at 2324.751 kb on - strand, within HP15_2205 at 2324.935 kb on - strand, within HP15_2205 at 2324.980 kb on + strand, within HP15_2205 at 2325.045 kb on + strand, within HP15_2205 at 2325.168 kb on + strand, within HP15_2205 at 2325.176 kb on - strand, within HP15_2205 at 2325.220 kb on - strand at 2325.305 kb on + strand at 2325.312 kb on + strand at 2325.313 kb on - strand at 2325.405 kb on + strand at 2325.454 kb on + strand at 2325.454 kb on + strand at 2325.459 kb on + strand at 2325.613 kb on - strand at 2325.781 kb on - strand at 2325.781 kb on - strand at 2325.864 kb on + strand, within HP15_2206 at 2325.871 kb on - strand, within HP15_2206 at 2325.873 kb on - strand, within HP15_2206 at 2325.897 kb on + strand, within HP15_2206 at 2325.904 kb on - strand, within HP15_2206 at 2326.020 kb on + strand, within HP15_2206 at 2326.028 kb on - strand, within HP15_2206 at 2326.041 kb on + strand, within HP15_2206 at 2326.041 kb on + strand, within HP15_2206 at 2326.041 kb on + strand, within HP15_2206 at 2326.049 kb on - strand, within HP15_2206 at 2326.082 kb on + strand, within HP15_2206 at 2326.096 kb on + strand, within HP15_2206 at 2326.127 kb on - strand, within HP15_2206 at 2326.245 kb on + strand, within HP15_2206 at 2326.283 kb on - strand, within HP15_2206 at 2326.353 kb on + strand, within HP15_2206
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine as (N) remove 2,323,027 + -0.5 2,323,087 - +0.3 2,323,094 - -1.0 2,323,174 - HP15_2204 0.18 +2.2 2,323,536 + HP15_2204 0.66 -1.1 2,323,613 - HP15_2204 0.77 +1.6 2,323,613 - HP15_2204 0.77 +1.5 2,323,791 + -1.5 2,323,879 + -0.6 2,324,019 + -1.5 2,324,027 - +2.4 2,324,044 + +2.1 2,324,397 - HP15_2205 0.33 +1.9 2,324,621 + HP15_2205 0.49 -2.0 2,324,636 + HP15_2205 0.50 -2.0 2,324,636 + HP15_2205 0.50 +1.7 2,324,644 - HP15_2205 0.50 +1.7 2,324,706 - HP15_2205 0.54 -0.5 2,324,750 - HP15_2205 0.58 +2.5 2,324,751 - HP15_2205 0.58 +0.4 2,324,935 - HP15_2205 0.70 +1.6 2,324,980 + HP15_2205 0.73 -0.4 2,325,045 + HP15_2205 0.78 +0.6 2,325,168 + HP15_2205 0.86 +2.1 2,325,176 - HP15_2205 0.87 +1.2 2,325,220 - -3.1 2,325,305 + +1.1 2,325,312 + -2.3 2,325,313 - -0.4 2,325,405 + -0.9 2,325,454 + +1.1 2,325,454 + +0.1 2,325,459 + -1.1 2,325,613 - +0.2 2,325,781 - +0.5 2,325,781 - -0.7 2,325,864 + HP15_2206 0.19 -0.1 2,325,871 - HP15_2206 0.20 -1.1 2,325,873 - HP15_2206 0.21 -1.2 2,325,897 + HP15_2206 0.24 +1.9 2,325,904 - HP15_2206 0.25 -1.2 2,326,020 + HP15_2206 0.39 +2.1 2,326,028 - HP15_2206 0.41 +0.7 2,326,041 + HP15_2206 0.42 -1.3 2,326,041 + HP15_2206 0.42 +1.0 2,326,041 + HP15_2206 0.42 -0.3 2,326,049 - HP15_2206 0.43 -0.1 2,326,082 + HP15_2206 0.47 -0.5 2,326,096 + HP15_2206 0.49 +1.6 2,326,127 - HP15_2206 0.53 +1.3 2,326,245 + HP15_2206 0.68 +1.6 2,326,283 - HP15_2206 0.73 +2.4 2,326,353 + HP15_2206 0.82 +1.2
Or see this region's nucleotide sequence