Experiment: L-Arginine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_214 and HP15_215 are separated by 143 nucleotides HP15_215 and HP15_216 are separated by 49 nucleotides
HP15_214: HP15_214 - DNA helicase, ATP-dependent, RepA type, at 199,356 to 201,374
_214
HP15_215: HP15_215 - sensory box/GGDEF family protein, at 201,518 to 203,254
_215
HP15_216: HP15_216 - DNA damage response protein (yhgF like) <small>(from data)</small>, at 203,304 to 205,643
_216
Position (kb) 201
202
203
204 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 201.420 kb on - strand at 201.428 kb on + strand at 201.438 kb on + strand at 201.456 kb on + strand at 201.577 kb on + strand at 201.587 kb on + strand at 201.590 kb on - strand at 201.608 kb on + strand at 201.631 kb on - strand at 201.801 kb on - strand, within HP15_215 at 201.806 kb on - strand, within HP15_215 at 201.896 kb on + strand, within HP15_215 at 201.904 kb on - strand, within HP15_215 at 202.018 kb on + strand, within HP15_215 at 202.091 kb on - strand, within HP15_215 at 202.219 kb on + strand, within HP15_215 at 202.261 kb on + strand, within HP15_215 at 202.269 kb on + strand, within HP15_215 at 202.277 kb on - strand, within HP15_215 at 202.277 kb on - strand, within HP15_215 at 202.304 kb on + strand, within HP15_215 at 202.304 kb on + strand, within HP15_215 at 202.312 kb on - strand, within HP15_215 at 202.312 kb on - strand, within HP15_215 at 202.317 kb on - strand, within HP15_215 at 202.531 kb on + strand, within HP15_215 at 202.658 kb on - strand, within HP15_215 at 202.668 kb on + strand, within HP15_215 at 202.832 kb on - strand, within HP15_215 at 202.839 kb on + strand, within HP15_215 at 202.880 kb on - strand, within HP15_215 at 203.001 kb on - strand, within HP15_215 at 203.034 kb on - strand, within HP15_215 at 203.074 kb on + strand, within HP15_215 at 203.084 kb on + strand at 203.186 kb on + strand at 203.248 kb on + strand at 203.286 kb on + strand at 203.358 kb on - strand at 203.365 kb on - strand at 203.386 kb on - strand at 203.409 kb on + strand at 203.416 kb on + strand at 203.434 kb on - strand at 203.499 kb on - strand at 203.517 kb on - strand at 203.545 kb on + strand, within HP15_216 at 203.555 kb on + strand, within HP15_216 at 203.602 kb on + strand, within HP15_216 at 203.615 kb on + strand, within HP15_216 at 203.709 kb on + strand, within HP15_216 at 203.729 kb on - strand, within HP15_216 at 203.734 kb on - strand, within HP15_216 at 203.949 kb on + strand, within HP15_216 at 203.959 kb on + strand, within HP15_216 at 203.983 kb on + strand, within HP15_216 at 204.050 kb on + strand, within HP15_216 at 204.247 kb on - strand, within HP15_216 at 204.254 kb on + strand, within HP15_216
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine as (N) remove 201,420 - +2.8 201,428 + +1.9 201,438 + -1.3 201,456 + -0.4 201,577 + -1.7 201,587 + +2.0 201,590 - +1.7 201,608 + -0.5 201,631 - +1.1 201,801 - HP15_215 0.16 -1.0 201,806 - HP15_215 0.17 +1.6 201,896 + HP15_215 0.22 -0.6 201,904 - HP15_215 0.22 -1.5 202,018 + HP15_215 0.29 -0.4 202,091 - HP15_215 0.33 +4.5 202,219 + HP15_215 0.40 +1.0 202,261 + HP15_215 0.43 +0.2 202,269 + HP15_215 0.43 -0.1 202,277 - HP15_215 0.44 +0.3 202,277 - HP15_215 0.44 -0.9 202,304 + HP15_215 0.45 +1.2 202,304 + HP15_215 0.45 +0.2 202,312 - HP15_215 0.46 -1.3 202,312 - HP15_215 0.46 +1.6 202,317 - HP15_215 0.46 -1.4 202,531 + HP15_215 0.58 +1.4 202,658 - HP15_215 0.66 +2.0 202,668 + HP15_215 0.66 +0.2 202,832 - HP15_215 0.76 -1.2 202,839 + HP15_215 0.76 -1.0 202,880 - HP15_215 0.78 +0.3 203,001 - HP15_215 0.85 -1.4 203,034 - HP15_215 0.87 +0.5 203,074 + HP15_215 0.90 +2.9 203,084 + +0.7 203,186 + +0.0 203,248 + +1.5 203,286 + +1.4 203,358 - +1.8 203,365 - -2.7 203,386 - +1.6 203,409 + +2.3 203,416 + -1.4 203,434 - -1.0 203,499 - -0.0 203,517 - +0.8 203,545 + HP15_216 0.10 -0.3 203,555 + HP15_216 0.11 -0.6 203,602 + HP15_216 0.13 -2.0 203,615 + HP15_216 0.13 +1.5 203,709 + HP15_216 0.17 +2.4 203,729 - HP15_216 0.18 -0.7 203,734 - HP15_216 0.18 -0.6 203,949 + HP15_216 0.28 +1.0 203,959 + HP15_216 0.28 +0.7 203,983 + HP15_216 0.29 -0.5 204,050 + HP15_216 0.32 +0.7 204,247 - HP15_216 0.40 -0.0 204,254 + HP15_216 0.41 -0.7
Or see this region's nucleotide sequence