Experiment: L-Arginine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_211 and HP15_212 overlap by 25 nucleotides HP15_212 and HP15_213 are separated by 146 nucleotides HP15_213 and HP15_214 are separated by 64 nucleotides HP15_214 and HP15_215 are separated by 143 nucleotides
HP15_211: HP15_211 - conserved hypothetical protein, membrane, at 198,337 to 198,675
_211
HP15_212: HP15_212 - hypothetical protein, at 198,651 to 198,788
_212
HP15_213: HP15_213 - cytochrome c5, at 198,935 to 199,291
_213
HP15_214: HP15_214 - DNA helicase, ATP-dependent, RepA type, at 199,356 to 201,374
_214
HP15_215: HP15_215 - sensory box/GGDEF family protein, at 201,518 to 203,254
_215
Position (kb) 199
200
201
202 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 198.359 kb on - strand at 198.403 kb on + strand, within HP15_211 at 198.609 kb on - strand, within HP15_211 at 198.748 kb on - strand, within HP15_212 at 198.813 kb on + strand at 198.821 kb on - strand at 198.885 kb on - strand at 198.909 kb on + strand at 199.022 kb on + strand, within HP15_213 at 199.041 kb on + strand, within HP15_213 at 199.148 kb on + strand, within HP15_213 at 199.258 kb on - strand at 201.420 kb on - strand at 201.428 kb on + strand at 201.438 kb on + strand at 201.456 kb on + strand at 201.577 kb on + strand at 201.587 kb on + strand at 201.590 kb on - strand at 201.608 kb on + strand at 201.631 kb on - strand at 201.801 kb on - strand, within HP15_215 at 201.806 kb on - strand, within HP15_215 at 201.896 kb on + strand, within HP15_215 at 201.904 kb on - strand, within HP15_215 at 202.018 kb on + strand, within HP15_215 at 202.091 kb on - strand, within HP15_215 at 202.219 kb on + strand, within HP15_215 at 202.261 kb on + strand, within HP15_215 at 202.269 kb on + strand, within HP15_215 at 202.277 kb on - strand, within HP15_215 at 202.277 kb on - strand, within HP15_215 at 202.304 kb on + strand, within HP15_215 at 202.304 kb on + strand, within HP15_215 at 202.312 kb on - strand, within HP15_215 at 202.312 kb on - strand, within HP15_215 at 202.317 kb on - strand, within HP15_215
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine as (N) remove 198,359 - +1.5 198,403 + HP15_211 0.19 -0.1 198,609 - HP15_211 0.80 +2.0 198,748 - HP15_212 0.70 -0.5 198,813 + -1.9 198,821 - +0.2 198,885 - -0.6 198,909 + +0.0 199,022 + HP15_213 0.24 +1.4 199,041 + HP15_213 0.30 +2.1 199,148 + HP15_213 0.60 +1.4 199,258 - +0.2 201,420 - +2.8 201,428 + +1.9 201,438 + -1.3 201,456 + -0.4 201,577 + -1.7 201,587 + +2.0 201,590 - +1.7 201,608 + -0.5 201,631 - +1.1 201,801 - HP15_215 0.16 -1.0 201,806 - HP15_215 0.17 +1.6 201,896 + HP15_215 0.22 -0.6 201,904 - HP15_215 0.22 -1.5 202,018 + HP15_215 0.29 -0.4 202,091 - HP15_215 0.33 +4.5 202,219 + HP15_215 0.40 +1.0 202,261 + HP15_215 0.43 +0.2 202,269 + HP15_215 0.43 -0.1 202,277 - HP15_215 0.44 +0.3 202,277 - HP15_215 0.44 -0.9 202,304 + HP15_215 0.45 +1.2 202,304 + HP15_215 0.45 +0.2 202,312 - HP15_215 0.46 -1.3 202,312 - HP15_215 0.46 +1.6 202,317 - HP15_215 0.46 -1.4
Or see this region's nucleotide sequence