Experiment: L-Arginine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2080 and HP15_2081 are separated by 18 nucleotides HP15_2081 and HP15_2082 are separated by 429 nucleotides HP15_2082 and HP15_2083 are separated by 66 nucleotides HP15_2083 and HP15_2084 are separated by 57 nucleotides HP15_2084 and HP15_2085 are separated by 20 nucleotides
HP15_2080: HP15_2080 - ATP-dependent Clp protease ATP-binding subunit ClpA, at 2,179,224 to 2,181,494
_2080
HP15_2081: HP15_2081 - ATP-dependent Clp protease adaptor protein ClpS, at 2,181,513 to 2,181,749
_2081
HP15_2082: HP15_2082 - cold-shock DNA-binding domain protein, at 2,182,179 to 2,182,490
_2082
HP15_2083: HP15_2083 - hypothetical protein, at 2,182,557 to 2,182,724
_2083
HP15_2084: HP15_2084 - RNA pseudouridylate synthase, at 2,182,782 to 2,183,309
_2084
HP15_2085: HP15_2085 - MutT/nudix family protein, at 2,183,330 to 2,183,770
_2085
Position (kb)
2182
2183 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2181.218 kb on + strand, within HP15_2080 at 2181.226 kb on - strand, within HP15_2080 at 2181.226 kb on - strand, within HP15_2080 at 2181.245 kb on + strand, within HP15_2080 at 2181.418 kb on + strand at 2181.465 kb on - strand at 2181.509 kb on - strand at 2181.516 kb on + strand at 2181.540 kb on - strand, within HP15_2081 at 2181.559 kb on + strand, within HP15_2081 at 2181.562 kb on + strand, within HP15_2081 at 2181.614 kb on - strand, within HP15_2081 at 2181.614 kb on - strand, within HP15_2081 at 2181.643 kb on - strand, within HP15_2081 at 2181.643 kb on - strand, within HP15_2081 at 2181.748 kb on + strand at 2181.801 kb on - strand at 2182.316 kb on + strand, within HP15_2082 at 2182.316 kb on + strand, within HP15_2082 at 2182.316 kb on + strand, within HP15_2082 at 2182.324 kb on - strand, within HP15_2082 at 2182.370 kb on - strand, within HP15_2082 at 2182.479 kb on + strand at 2182.487 kb on - strand at 2182.497 kb on - strand at 2182.589 kb on - strand, within HP15_2083 at 2182.631 kb on + strand, within HP15_2083 at 2182.631 kb on + strand, within HP15_2083 at 2182.639 kb on - strand, within HP15_2083 at 2182.641 kb on + strand, within HP15_2083 at 2182.649 kb on - strand, within HP15_2083 at 2182.650 kb on - strand, within HP15_2083 at 2182.663 kb on + strand, within HP15_2083 at 2182.681 kb on - strand, within HP15_2083 at 2182.762 kb on + strand at 2182.850 kb on - strand, within HP15_2084 at 2182.861 kb on + strand, within HP15_2084 at 2182.869 kb on - strand, within HP15_2084 at 2182.886 kb on - strand, within HP15_2084 at 2182.898 kb on + strand, within HP15_2084 at 2182.973 kb on + strand, within HP15_2084 at 2182.981 kb on - strand, within HP15_2084 at 2183.098 kb on - strand, within HP15_2084 at 2183.318 kb on + strand at 2183.326 kb on - strand at 2183.355 kb on - strand at 2183.432 kb on + strand, within HP15_2085 at 2183.466 kb on + strand, within HP15_2085 at 2183.474 kb on - strand, within HP15_2085
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine as (N) remove 2,181,218 + HP15_2080 0.88 +2.4 2,181,226 - HP15_2080 0.88 -0.0 2,181,226 - HP15_2080 0.88 -2.3 2,181,245 + HP15_2080 0.89 -0.6 2,181,418 + +0.0 2,181,465 - +0.9 2,181,509 - +1.4 2,181,516 + +1.9 2,181,540 - HP15_2081 0.11 -0.3 2,181,559 + HP15_2081 0.19 +1.8 2,181,562 + HP15_2081 0.21 -0.4 2,181,614 - HP15_2081 0.43 +2.6 2,181,614 - HP15_2081 0.43 -0.4 2,181,643 - HP15_2081 0.55 +2.8 2,181,643 - HP15_2081 0.55 +0.7 2,181,748 + +1.3 2,181,801 - +0.7 2,182,316 + HP15_2082 0.44 -1.1 2,182,316 + HP15_2082 0.44 -0.3 2,182,316 + HP15_2082 0.44 +0.5 2,182,324 - HP15_2082 0.46 -0.3 2,182,370 - HP15_2082 0.61 +0.2 2,182,479 + -0.2 2,182,487 - +0.1 2,182,497 - -0.6 2,182,589 - HP15_2083 0.19 -0.6 2,182,631 + HP15_2083 0.44 -0.5 2,182,631 + HP15_2083 0.44 +1.1 2,182,639 - HP15_2083 0.49 -1.6 2,182,641 + HP15_2083 0.50 +0.9 2,182,649 - HP15_2083 0.55 +1.4 2,182,650 - HP15_2083 0.55 -0.2 2,182,663 + HP15_2083 0.63 +1.2 2,182,681 - HP15_2083 0.74 +1.8 2,182,762 + -0.5 2,182,850 - HP15_2084 0.13 -0.3 2,182,861 + HP15_2084 0.15 +0.4 2,182,869 - HP15_2084 0.16 -1.1 2,182,886 - HP15_2084 0.20 -0.9 2,182,898 + HP15_2084 0.22 -0.6 2,182,973 + HP15_2084 0.36 +2.1 2,182,981 - HP15_2084 0.38 -0.0 2,183,098 - HP15_2084 0.60 -0.1 2,183,318 + +2.0 2,183,326 - -0.2 2,183,355 - -0.4 2,183,432 + HP15_2085 0.23 -2.0 2,183,466 + HP15_2085 0.31 -1.5 2,183,474 - HP15_2085 0.33 -0.2
Or see this region's nucleotide sequence