Experiment: L-Arginine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1195 and HP15_1196 are separated by 116 nucleotides HP15_1196 and HP15_1197 are separated by 36 nucleotides HP15_1197 and HP15_1198 are separated by 47 nucleotides
HP15_1195: HP15_1195 - protein containing RecF/RecN/SMC protein, N-terminal domain, at 1,229,809 to 1,231,869
_1195
HP15_1196: HP15_1196 - membrane protein, at 1,231,986 to 1,232,336
_1196
HP15_1197: HP15_1197 - conserved hypothetical protein, at 1,232,373 to 1,233,335
_1197
HP15_1198: HP15_1198 - protein containing putative phage-type endonuclease domain, at 1,233,383 to 1,234,423
_1198
Position (kb) 1232
1233
1234 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 1231.548 kb on - strand, within HP15_1195 at 1231.553 kb on - strand, within HP15_1195 at 1231.616 kb on + strand, within HP15_1195 at 1231.624 kb on - strand, within HP15_1195 at 1231.742 kb on - strand at 1231.818 kb on - strand at 1231.931 kb on + strand at 1232.163 kb on - strand, within HP15_1196 at 1232.198 kb on + strand, within HP15_1196 at 1232.251 kb on - strand, within HP15_1196 at 1232.257 kb on - strand, within HP15_1196 at 1232.315 kb on - strand at 1232.325 kb on - strand at 1232.413 kb on + strand at 1232.414 kb on - strand at 1232.415 kb on - strand at 1232.441 kb on + strand at 1232.443 kb on + strand at 1232.558 kb on - strand, within HP15_1197 at 1232.606 kb on - strand, within HP15_1197 at 1232.717 kb on - strand, within HP15_1197 at 1232.765 kb on + strand, within HP15_1197 at 1232.894 kb on - strand, within HP15_1197 at 1232.932 kb on - strand, within HP15_1197 at 1232.936 kb on + strand, within HP15_1197 at 1232.984 kb on - strand, within HP15_1197 at 1233.081 kb on - strand, within HP15_1197 at 1233.088 kb on - strand, within HP15_1197 at 1233.145 kb on - strand, within HP15_1197 at 1233.186 kb on + strand, within HP15_1197 at 1233.186 kb on + strand, within HP15_1197 at 1233.225 kb on + strand, within HP15_1197 at 1233.312 kb on - strand at 1233.322 kb on - strand at 1233.481 kb on - strand at 1233.595 kb on + strand, within HP15_1198 at 1233.740 kb on + strand, within HP15_1198 at 1233.750 kb on + strand, within HP15_1198 at 1233.847 kb on + strand, within HP15_1198 at 1233.907 kb on - strand, within HP15_1198 at 1233.940 kb on + strand, within HP15_1198 at 1233.955 kb on - strand, within HP15_1198 at 1233.973 kb on + strand, within HP15_1198 at 1233.975 kb on - strand, within HP15_1198 at 1233.975 kb on - strand, within HP15_1198 at 1234.006 kb on - strand, within HP15_1198 at 1234.116 kb on - strand, within HP15_1198 at 1234.141 kb on - strand, within HP15_1198 at 1234.199 kb on + strand, within HP15_1198 at 1234.217 kb on - strand, within HP15_1198 at 1234.266 kb on + strand, within HP15_1198
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine as (N) remove 1,231,548 - HP15_1195 0.84 -2.8 1,231,553 - HP15_1195 0.85 -2.1 1,231,616 + HP15_1195 0.88 +1.7 1,231,624 - HP15_1195 0.88 +2.0 1,231,742 - +2.1 1,231,818 - +0.6 1,231,931 + -0.0 1,232,163 - HP15_1196 0.50 +1.0 1,232,198 + HP15_1196 0.60 +0.2 1,232,251 - HP15_1196 0.75 -1.2 1,232,257 - HP15_1196 0.77 +1.6 1,232,315 - -1.3 1,232,325 - +1.6 1,232,413 + -1.4 1,232,414 - -2.5 1,232,415 - -0.9 1,232,441 + +4.0 1,232,443 + +2.1 1,232,558 - HP15_1197 0.19 -2.0 1,232,606 - HP15_1197 0.24 +0.9 1,232,717 - HP15_1197 0.36 +2.3 1,232,765 + HP15_1197 0.41 +1.5 1,232,894 - HP15_1197 0.54 +1.2 1,232,932 - HP15_1197 0.58 +1.0 1,232,936 + HP15_1197 0.58 -2.0 1,232,984 - HP15_1197 0.63 +2.6 1,233,081 - HP15_1197 0.74 +1.0 1,233,088 - HP15_1197 0.74 -0.4 1,233,145 - HP15_1197 0.80 -0.0 1,233,186 + HP15_1197 0.84 -0.1 1,233,186 + HP15_1197 0.84 +1.6 1,233,225 + HP15_1197 0.88 +0.5 1,233,312 - -0.2 1,233,322 - -0.7 1,233,481 - -0.4 1,233,595 + HP15_1198 0.20 +1.0 1,233,740 + HP15_1198 0.34 -1.6 1,233,750 + HP15_1198 0.35 +1.0 1,233,847 + HP15_1198 0.45 +1.6 1,233,907 - HP15_1198 0.50 -1.6 1,233,940 + HP15_1198 0.54 -0.7 1,233,955 - HP15_1198 0.55 +2.1 1,233,973 + HP15_1198 0.57 -0.1 1,233,975 - HP15_1198 0.57 +2.0 1,233,975 - HP15_1198 0.57 -0.3 1,234,006 - HP15_1198 0.60 -1.7 1,234,116 - HP15_1198 0.70 -1.5 1,234,141 - HP15_1198 0.73 -0.7 1,234,199 + HP15_1198 0.78 +1.5 1,234,217 - HP15_1198 0.80 -0.5 1,234,266 + HP15_1198 0.85 -1.6
Or see this region's nucleotide sequence