Experiment: L-Arginine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1100 and HP15_1101 are separated by 539 nucleotides HP15_1101 and HP15_1102 are separated by 41 nucleotides
HP15_1100: HP15_1100 - ABC-transporter substrate-binding protein, at 1,126,329 to 1,127,231
_1100
HP15_1101: HP15_1101 - transposase IS3/IS911, at 1,127,771 to 1,128,055
_1101
HP15_1102: HP15_1102 - integrase catalytic region, at 1,128,097 to 1,128,906
_1102
Position (kb)
1127
1128
1129 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5 at 1126.777 kb on - strand, within HP15_1100 at 1126.777 kb on - strand, within HP15_1100 at 1126.777 kb on - strand, within HP15_1100 at 1126.893 kb on + strand, within HP15_1100 at 1126.901 kb on - strand, within HP15_1100 at 1126.901 kb on - strand, within HP15_1100 at 1126.901 kb on - strand, within HP15_1100 at 1126.952 kb on + strand, within HP15_1100 at 1126.988 kb on - strand, within HP15_1100 at 1127.031 kb on + strand, within HP15_1100 at 1127.046 kb on - strand, within HP15_1100 at 1127.046 kb on - strand, within HP15_1100 at 1127.056 kb on + strand, within HP15_1100 at 1127.056 kb on + strand, within HP15_1100 at 1127.185 kb on + strand at 1127.254 kb on + strand at 1127.260 kb on + strand at 1127.268 kb on - strand at 1127.268 kb on - strand at 1127.268 kb on - strand at 1127.288 kb on + strand at 1127.340 kb on - strand at 1127.360 kb on + strand at 1127.585 kb on - strand at 1127.603 kb on + strand at 1127.603 kb on + strand at 1127.611 kb on - strand at 1127.672 kb on + strand at 1127.680 kb on - strand at 1127.712 kb on + strand at 1127.720 kb on - strand at 1127.720 kb on - strand at 1127.735 kb on + strand at 1127.735 kb on + strand at 1127.735 kb on + strand at 1127.735 kb on + strand at 1127.743 kb on - strand at 1127.768 kb on + strand at 1127.768 kb on + strand at 1127.790 kb on - strand at 1127.822 kb on + strand, within HP15_1101 at 1127.830 kb on - strand, within HP15_1101 at 1127.833 kb on + strand, within HP15_1101 at 1127.841 kb on - strand, within HP15_1101 at 1127.841 kb on - strand, within HP15_1101 at 1127.841 kb on - strand, within HP15_1101 at 1127.952 kb on - strand, within HP15_1101 at 1127.992 kb on + strand, within HP15_1101 at 1127.994 kb on + strand, within HP15_1101 at 1128.024 kb on - strand, within HP15_1101 at 1128.034 kb on - strand at 1128.122 kb on - strand at 1128.134 kb on + strand at 1128.139 kb on + strand at 1128.219 kb on + strand, within HP15_1102 at 1128.224 kb on + strand, within HP15_1102 at 1128.224 kb on + strand, within HP15_1102 at 1128.253 kb on + strand, within HP15_1102 at 1128.253 kb on + strand, within HP15_1102 at 1128.349 kb on - strand, within HP15_1102 at 1128.386 kb on + strand, within HP15_1102 at 1128.427 kb on + strand, within HP15_1102 at 1128.430 kb on - strand, within HP15_1102 at 1128.432 kb on + strand, within HP15_1102 at 1128.432 kb on + strand, within HP15_1102 at 1128.464 kb on - strand, within HP15_1102 at 1128.466 kb on + strand, within HP15_1102 at 1128.474 kb on - strand, within HP15_1102 at 1128.488 kb on - strand, within HP15_1102 at 1128.488 kb on - strand, within HP15_1102 at 1128.490 kb on - strand, within HP15_1102 at 1128.525 kb on - strand, within HP15_1102 at 1128.544 kb on - strand, within HP15_1102 at 1128.581 kb on - strand, within HP15_1102 at 1128.587 kb on + strand, within HP15_1102 at 1128.680 kb on + strand, within HP15_1102 at 1128.798 kb on + strand, within HP15_1102 at 1128.806 kb on - strand, within HP15_1102 at 1128.806 kb on - strand, within HP15_1102 at 1128.875 kb on + strand at 1128.875 kb on + strand at 1128.875 kb on + strand at 1128.883 kb on - strand at 1128.883 kb on - strand at 1128.883 kb on - strand at 1128.945 kb on - strand at 1129.029 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine as (N) remove 1,126,777 - HP15_1100 0.50 +0.8 1,126,777 - HP15_1100 0.50 -1.3 1,126,777 - HP15_1100 0.50 -2.4 1,126,893 + HP15_1100 0.62 -0.7 1,126,901 - HP15_1100 0.63 +1.0 1,126,901 - HP15_1100 0.63 -1.1 1,126,901 - HP15_1100 0.63 +5.0 1,126,952 + HP15_1100 0.69 -0.1 1,126,988 - HP15_1100 0.73 +0.6 1,127,031 + HP15_1100 0.78 +2.2 1,127,046 - HP15_1100 0.79 +1.4 1,127,046 - HP15_1100 0.79 -1.1 1,127,056 + HP15_1100 0.81 +0.1 1,127,056 + HP15_1100 0.81 -1.3 1,127,185 + +1.5 1,127,254 + +0.1 1,127,260 + -0.3 1,127,268 - +0.0 1,127,268 - +0.1 1,127,268 - -1.9 1,127,288 + +1.3 1,127,340 - +0.0 1,127,360 + +2.4 1,127,585 - +2.4 1,127,603 + +1.9 1,127,603 + -0.5 1,127,611 - +1.9 1,127,672 + -0.5 1,127,680 - -0.4 1,127,712 + -0.3 1,127,720 - +0.7 1,127,720 - -0.2 1,127,735 + -0.7 1,127,735 + +0.1 1,127,735 + -0.2 1,127,735 + -1.2 1,127,743 - +0.4 1,127,768 + -0.8 1,127,768 + +1.4 1,127,790 - +2.2 1,127,822 + HP15_1101 0.18 +2.4 1,127,830 - HP15_1101 0.21 +2.0 1,127,833 + HP15_1101 0.22 -1.2 1,127,841 - HP15_1101 0.25 +1.0 1,127,841 - HP15_1101 0.25 -0.7 1,127,841 - HP15_1101 0.25 +0.4 1,127,952 - HP15_1101 0.64 -0.1 1,127,992 + HP15_1101 0.78 -0.9 1,127,994 + HP15_1101 0.78 +0.2 1,128,024 - HP15_1101 0.89 +1.8 1,128,034 - -0.8 1,128,122 - +1.3 1,128,134 + +1.6 1,128,139 + -0.0 1,128,219 + HP15_1102 0.15 -0.9 1,128,224 + HP15_1102 0.16 -0.4 1,128,224 + HP15_1102 0.16 +2.0 1,128,253 + HP15_1102 0.19 +2.2 1,128,253 + HP15_1102 0.19 +2.0 1,128,349 - HP15_1102 0.31 -0.0 1,128,386 + HP15_1102 0.36 +2.1 1,128,427 + HP15_1102 0.41 -0.1 1,128,430 - HP15_1102 0.41 +2.4 1,128,432 + HP15_1102 0.41 +0.3 1,128,432 + HP15_1102 0.41 -1.1 1,128,464 - HP15_1102 0.45 -0.2 1,128,466 + HP15_1102 0.46 +0.7 1,128,474 - HP15_1102 0.47 -0.1 1,128,488 - HP15_1102 0.48 +2.3 1,128,488 - HP15_1102 0.48 -0.0 1,128,490 - HP15_1102 0.49 +0.3 1,128,525 - HP15_1102 0.53 +1.4 1,128,544 - HP15_1102 0.55 +1.4 1,128,581 - HP15_1102 0.60 +2.8 1,128,587 + HP15_1102 0.60 +1.5 1,128,680 + HP15_1102 0.72 +0.1 1,128,798 + HP15_1102 0.87 +2.3 1,128,806 - HP15_1102 0.88 +2.3 1,128,806 - HP15_1102 0.88 +1.4 1,128,875 + -0.4 1,128,875 + +0.6 1,128,875 + +0.5 1,128,883 - +1.9 1,128,883 - -0.3 1,128,883 - -0.1 1,128,945 - +0.5 1,129,029 + -3.1
Or see this region's nucleotide sequence