Strain Fitness in Marinobacter adhaerens HP15 around HP15_1095

Experiment: L-Arginine as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1094 and HP15_1095 are separated by 704 nucleotidesHP15_1095 and HP15_1096 are separated by 140 nucleotidesHP15_1096 and HP15_1097 overlap by 4 nucleotides HP15_1094: HP15_1094 - benzoate membrane transport protein, at 1,119,879 to 1,121,111 _1094 HP15_1095: HP15_1095 - porin, at 1,121,816 to 1,122,769 _1095 HP15_1096: HP15_1096 - branched-chain amino acid ABC transporter, ATP-binding protein, at 1,122,910 to 1,123,623 _1096 HP15_1097: HP15_1097 - branched-chain amino acid ABC transporter, ATP-binding protein, at 1,123,620 to 1,124,387 _1097 Position (kb) 1121 1122 1123Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1120.843 kb on + strand, within HP15_1094at 1120.846 kb on - strand, within HP15_1094at 1120.855 kb on + strand, within HP15_1094at 1120.863 kb on - strand, within HP15_1094at 1120.863 kb on - strand, within HP15_1094at 1120.863 kb on - strand, within HP15_1094at 1120.958 kb on - strand, within HP15_1094at 1120.967 kb on - strand, within HP15_1094at 1120.980 kb on - strand, within HP15_1094at 1121.070 kb on - strandat 1121.070 kb on - strandat 1121.070 kb on - strandat 1121.180 kb on - strandat 1121.285 kb on + strandat 1121.287 kb on + strandat 1121.359 kb on - strandat 1121.438 kb on + strandat 1121.438 kb on + strandat 1121.446 kb on - strandat 1121.446 kb on - strandat 1121.446 kb on - strandat 1121.446 kb on - strandat 1121.467 kb on + strandat 1121.494 kb on - strandat 1121.575 kb on - strandat 1121.595 kb on - strandat 1121.610 kb on - strandat 1121.611 kb on + strandat 1121.663 kb on - strandat 1121.803 kb on - strandat 1121.904 kb on - strandat 1122.077 kb on - strand, within HP15_1095at 1122.141 kb on + strand, within HP15_1095at 1122.168 kb on - strand, within HP15_1095at 1122.168 kb on - strand, within HP15_1095at 1122.251 kb on - strand, within HP15_1095at 1122.298 kb on - strand, within HP15_1095at 1122.371 kb on + strand, within HP15_1095at 1122.379 kb on - strand, within HP15_1095at 1122.397 kb on + strand, within HP15_1095at 1122.436 kb on - strand, within HP15_1095at 1122.453 kb on + strand, within HP15_1095at 1122.453 kb on + strand, within HP15_1095at 1122.453 kb on + strand, within HP15_1095at 1122.453 kb on + strand, within HP15_1095at 1122.461 kb on - strand, within HP15_1095at 1122.461 kb on - strand, within HP15_1095at 1122.461 kb on - strand, within HP15_1095at 1122.476 kb on - strand, within HP15_1095at 1122.551 kb on - strand, within HP15_1095at 1122.551 kb on - strand, within HP15_1095at 1122.586 kb on - strand, within HP15_1095at 1122.586 kb on - strand, within HP15_1095at 1122.769 kb on + strandat 1122.769 kb on + strandat 1123.123 kb on + strand, within HP15_1096at 1123.173 kb on - strand, within HP15_1096at 1123.224 kb on + strand, within HP15_1096at 1123.258 kb on + strand, within HP15_1096at 1123.485 kb on - strand, within HP15_1096at 1123.492 kb on - strand, within HP15_1096at 1123.492 kb on - strand, within HP15_1096at 1123.497 kb on - strand, within HP15_1096at 1123.586 kb on + strandat 1123.594 kb on - strandat 1123.594 kb on - strandat 1123.717 kb on + strand, within HP15_1097

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine as (N)
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1,120,843 + HP15_1094 0.78 -0.2
1,120,846 - HP15_1094 0.78 +1.9
1,120,855 + HP15_1094 0.79 +1.4
1,120,863 - HP15_1094 0.80 +1.0
1,120,863 - HP15_1094 0.80 +1.2
1,120,863 - HP15_1094 0.80 -1.6
1,120,958 - HP15_1094 0.88 -2.3
1,120,967 - HP15_1094 0.88 -0.0
1,120,980 - HP15_1094 0.89 +0.4
1,121,070 - -0.7
1,121,070 - +2.2
1,121,070 - -0.4
1,121,180 - +0.1
1,121,285 + -1.0
1,121,287 + +2.0
1,121,359 - +2.3
1,121,438 + -0.1
1,121,438 + -0.6
1,121,446 - +0.5
1,121,446 - +1.9
1,121,446 - +1.7
1,121,446 - +2.0
1,121,467 + +1.8
1,121,494 - -1.2
1,121,575 - +1.5
1,121,595 - +0.2
1,121,610 - -0.1
1,121,611 + +0.3
1,121,663 - +0.3
1,121,803 - +2.4
1,121,904 - +0.1
1,122,077 - HP15_1095 0.27 -0.2
1,122,141 + HP15_1095 0.34 +1.1
1,122,168 - HP15_1095 0.37 +2.2
1,122,168 - HP15_1095 0.37 +2.1
1,122,251 - HP15_1095 0.46 -0.2
1,122,298 - HP15_1095 0.51 +1.7
1,122,371 + HP15_1095 0.58 +2.1
1,122,379 - HP15_1095 0.59 +2.6
1,122,397 + HP15_1095 0.61 +2.3
1,122,436 - HP15_1095 0.65 +2.6
1,122,453 + HP15_1095 0.67 -0.5
1,122,453 + HP15_1095 0.67 +2.3
1,122,453 + HP15_1095 0.67 -1.2
1,122,453 + HP15_1095 0.67 +2.5
1,122,461 - HP15_1095 0.68 -0.1
1,122,461 - HP15_1095 0.68 +0.1
1,122,461 - HP15_1095 0.68 +1.0
1,122,476 - HP15_1095 0.69 -0.8
1,122,551 - HP15_1095 0.77 +2.0
1,122,551 - HP15_1095 0.77 -0.2
1,122,586 - HP15_1095 0.81 +0.6
1,122,586 - HP15_1095 0.81 -0.1
1,122,769 + -3.4
1,122,769 + +2.5
1,123,123 + HP15_1096 0.30 +2.5
1,123,173 - HP15_1096 0.37 +2.1
1,123,224 + HP15_1096 0.44 +1.7
1,123,258 + HP15_1096 0.49 -2.4
1,123,485 - HP15_1096 0.81 -1.4
1,123,492 - HP15_1096 0.82 +0.4
1,123,492 - HP15_1096 0.82 -0.0
1,123,497 - HP15_1096 0.82 +2.1
1,123,586 + -0.6
1,123,594 - +0.3
1,123,594 - +0.1
1,123,717 + HP15_1097 0.13 +2.0

Or see this region's nucleotide sequence