Experiment: L-Arginine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1019 and HP15_1020 overlap by 4 nucleotides HP15_1020 and HP15_1021 are separated by 154 nucleotides HP15_1021 and HP15_1022 overlap by 16 nucleotides
HP15_1019: HP15_1019 - multidrug resistance protein, at 1,032,366 to 1,035,449
_1019
HP15_1020: HP15_1020 - methyl-accepting chemotaxis sensory transducer, at 1,035,446 to 1,037,071
_1020
HP15_1021: HP15_1021 - tRNA pseudouridine synthase C, at 1,037,226 to 1,037,969
_1021
HP15_1022: HP15_1022 - sensory box protein/GGDEF domain protein, at 1,037,954 to 1,039,810
_1022
Position (kb)
1035
1036
1037
1038 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 1034.644 kb on - strand, within HP15_1019 at 1034.716 kb on - strand, within HP15_1019 at 1034.966 kb on - strand, within HP15_1019 at 1034.998 kb on - strand, within HP15_1019 at 1035.085 kb on - strand, within HP15_1019 at 1035.150 kb on - strand at 1035.274 kb on + strand at 1035.274 kb on + strand at 1035.282 kb on - strand at 1035.310 kb on - strand at 1035.312 kb on + strand at 1035.325 kb on - strand at 1035.325 kb on - strand at 1035.444 kb on + strand at 1035.494 kb on - strand at 1035.544 kb on - strand at 1035.544 kb on - strand at 1035.607 kb on - strand at 1035.724 kb on + strand, within HP15_1020 at 1035.857 kb on + strand, within HP15_1020 at 1035.913 kb on + strand, within HP15_1020 at 1035.925 kb on - strand, within HP15_1020 at 1036.094 kb on - strand, within HP15_1020 at 1036.094 kb on - strand, within HP15_1020 at 1036.096 kb on + strand, within HP15_1020 at 1036.203 kb on - strand, within HP15_1020 at 1036.426 kb on + strand, within HP15_1020 at 1036.432 kb on + strand, within HP15_1020 at 1036.435 kb on - strand, within HP15_1020 at 1036.536 kb on + strand, within HP15_1020 at 1036.613 kb on + strand, within HP15_1020 at 1036.621 kb on - strand, within HP15_1020 at 1036.783 kb on + strand, within HP15_1020 at 1036.809 kb on - strand, within HP15_1020 at 1036.845 kb on - strand, within HP15_1020 at 1036.850 kb on + strand, within HP15_1020 at 1036.881 kb on + strand, within HP15_1020 at 1037.214 kb on - strand at 1037.224 kb on - strand at 1037.264 kb on + strand at 1037.264 kb on + strand at 1037.264 kb on + strand at 1037.276 kb on + strand at 1037.383 kb on - strand, within HP15_1021 at 1037.554 kb on + strand, within HP15_1021 at 1037.603 kb on - strand, within HP15_1021 at 1037.748 kb on - strand, within HP15_1021 at 1037.834 kb on + strand, within HP15_1021 at 1037.911 kb on + strand at 1037.980 kb on + strand at 1037.988 kb on - strand at 1037.988 kb on - strand at 1038.016 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine as (N) remove 1,034,644 - HP15_1019 0.74 +0.1 1,034,716 - HP15_1019 0.76 +1.9 1,034,966 - HP15_1019 0.84 +0.4 1,034,998 - HP15_1019 0.85 +0.8 1,035,085 - HP15_1019 0.88 -0.4 1,035,150 - -0.7 1,035,274 + -0.6 1,035,274 + -1.7 1,035,282 - +1.6 1,035,310 - -0.1 1,035,312 + +0.1 1,035,325 - +0.4 1,035,325 - +0.1 1,035,444 + -1.4 1,035,494 - -0.3 1,035,544 - +2.7 1,035,544 - +1.3 1,035,607 - -1.3 1,035,724 + HP15_1020 0.17 +1.5 1,035,857 + HP15_1020 0.25 -0.1 1,035,913 + HP15_1020 0.29 -0.3 1,035,925 - HP15_1020 0.29 -1.3 1,036,094 - HP15_1020 0.40 +2.2 1,036,094 - HP15_1020 0.40 -0.2 1,036,096 + HP15_1020 0.40 -0.9 1,036,203 - HP15_1020 0.47 +2.3 1,036,426 + HP15_1020 0.60 +1.5 1,036,432 + HP15_1020 0.61 -0.4 1,036,435 - HP15_1020 0.61 +1.7 1,036,536 + HP15_1020 0.67 +2.2 1,036,613 + HP15_1020 0.72 -0.1 1,036,621 - HP15_1020 0.72 +1.5 1,036,783 + HP15_1020 0.82 +2.3 1,036,809 - HP15_1020 0.84 +2.9 1,036,845 - HP15_1020 0.86 +0.4 1,036,850 + HP15_1020 0.86 +0.1 1,036,881 + HP15_1020 0.88 +1.8 1,037,214 - +1.8 1,037,224 - -0.2 1,037,264 + +1.7 1,037,264 + +0.6 1,037,264 + -0.8 1,037,276 + -2.0 1,037,383 - HP15_1021 0.21 +2.1 1,037,554 + HP15_1021 0.44 +0.7 1,037,603 - HP15_1021 0.51 +0.5 1,037,748 - HP15_1021 0.70 -0.7 1,037,834 + HP15_1021 0.82 -1.9 1,037,911 + +1.9 1,037,980 + -0.2 1,037,988 - -1.1 1,037,988 - +1.9 1,038,016 + -1.1
Or see this region's nucleotide sequence