Strain Fitness in Marinobacter adhaerens HP15 around HP15_1012

Experiment: L-Arginine as (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1011 and HP15_1012 are separated by 312 nucleotidesHP15_1012 and HP15_1013 are separated by 2 nucleotidesHP15_1013 and HP15_1014 are separated by 55 nucleotides HP15_1011: HP15_1011 - two component, sigma54 specific, transcriptional regulator, Fis family, at 1,022,681 to 1,024,597 _1011 HP15_1012: HP15_1012 - nitrate transporter component, NrtA, at 1,024,910 to 1,026,331 _1012 HP15_1013: HP15_1013 - nitrate transport system permease protein, at 1,026,334 to 1,027,161 _1013 HP15_1014: HP15_1014 - nitrate ABC transporter, ATPase subunits C and D, at 1,027,217 to 1,028,125 _1014 Position (kb) 1024 1025 1026 1027Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1023.947 kb on + strand, within HP15_1011at 1023.947 kb on + strand, within HP15_1011at 1023.958 kb on + strand, within HP15_1011at 1023.958 kb on + strand, within HP15_1011at 1024.139 kb on + strand, within HP15_1011at 1024.146 kb on + strand, within HP15_1011at 1024.167 kb on - strand, within HP15_1011at 1024.203 kb on - strand, within HP15_1011at 1024.235 kb on - strand, within HP15_1011at 1024.360 kb on - strand, within HP15_1011at 1024.369 kb on + strand, within HP15_1011at 1024.411 kb on + strandat 1024.469 kb on + strandat 1024.502 kb on - strandat 1024.811 kb on - strandat 1024.830 kb on + strandat 1024.969 kb on + strandat 1025.037 kb on + strandat 1025.200 kb on - strand, within HP15_1012at 1025.222 kb on + strand, within HP15_1012at 1025.232 kb on + strand, within HP15_1012at 1025.232 kb on + strand, within HP15_1012at 1025.248 kb on + strand, within HP15_1012at 1025.349 kb on + strand, within HP15_1012at 1025.357 kb on - strand, within HP15_1012at 1025.357 kb on - strand, within HP15_1012at 1025.460 kb on - strand, within HP15_1012at 1025.559 kb on - strand, within HP15_1012at 1025.570 kb on - strand, within HP15_1012at 1025.570 kb on - strand, within HP15_1012at 1025.670 kb on - strand, within HP15_1012at 1025.677 kb on + strand, within HP15_1012at 1025.696 kb on + strand, within HP15_1012at 1025.721 kb on + strand, within HP15_1012at 1025.845 kb on - strand, within HP15_1012at 1025.888 kb on + strand, within HP15_1012at 1025.915 kb on + strand, within HP15_1012at 1025.979 kb on + strand, within HP15_1012at 1025.987 kb on - strand, within HP15_1012at 1025.987 kb on - strand, within HP15_1012at 1026.065 kb on + strand, within HP15_1012at 1026.072 kb on + strand, within HP15_1012at 1026.111 kb on + strand, within HP15_1012at 1026.178 kb on + strand, within HP15_1012at 1026.186 kb on - strand, within HP15_1012at 1026.228 kb on - strandat 1026.228 kb on - strandat 1026.228 kb on - strandat 1026.228 kb on - strandat 1026.230 kb on + strandat 1026.230 kb on + strandat 1026.251 kb on + strandat 1026.278 kb on + strandat 1026.348 kb on + strandat 1026.358 kb on + strandat 1026.436 kb on + strand, within HP15_1013at 1026.439 kb on - strand, within HP15_1013at 1026.538 kb on - strand, within HP15_1013at 1026.575 kb on + strand, within HP15_1013at 1026.593 kb on - strand, within HP15_1013at 1026.607 kb on - strand, within HP15_1013at 1026.612 kb on - strand, within HP15_1013at 1026.729 kb on + strand, within HP15_1013at 1026.738 kb on + strand, within HP15_1013at 1026.740 kb on + strand, within HP15_1013at 1026.747 kb on - strand, within HP15_1013at 1026.748 kb on - strand, within HP15_1013at 1026.855 kb on + strand, within HP15_1013at 1026.888 kb on - strand, within HP15_1013at 1026.915 kb on + strand, within HP15_1013at 1026.940 kb on + strand, within HP15_1013at 1027.057 kb on + strand, within HP15_1013at 1027.060 kb on - strand, within HP15_1013at 1027.062 kb on + strand, within HP15_1013at 1027.065 kb on - strand, within HP15_1013at 1027.115 kb on + strandat 1027.156 kb on + strandat 1027.190 kb on + strandat 1027.199 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Arginine as (N)
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1,023,947 + HP15_1011 0.66 +0.6
1,023,947 + HP15_1011 0.66 -1.5
1,023,958 + HP15_1011 0.67 +1.9
1,023,958 + HP15_1011 0.67 -0.7
1,024,139 + HP15_1011 0.76 -0.7
1,024,146 + HP15_1011 0.76 -0.8
1,024,167 - HP15_1011 0.78 -0.7
1,024,203 - HP15_1011 0.79 -0.5
1,024,235 - HP15_1011 0.81 -1.7
1,024,360 - HP15_1011 0.88 +0.3
1,024,369 + HP15_1011 0.88 -1.9
1,024,411 + +0.5
1,024,469 + +2.6
1,024,502 - -2.0
1,024,811 - -0.9
1,024,830 + +1.5
1,024,969 + -0.0
1,025,037 + +0.8
1,025,200 - HP15_1012 0.20 +2.3
1,025,222 + HP15_1012 0.22 +0.0
1,025,232 + HP15_1012 0.23 +1.1
1,025,232 + HP15_1012 0.23 +0.4
1,025,248 + HP15_1012 0.24 -0.2
1,025,349 + HP15_1012 0.31 +0.4
1,025,357 - HP15_1012 0.31 -1.1
1,025,357 - HP15_1012 0.31 -0.4
1,025,460 - HP15_1012 0.39 +1.9
1,025,559 - HP15_1012 0.46 +1.9
1,025,570 - HP15_1012 0.46 -0.5
1,025,570 - HP15_1012 0.46 +2.7
1,025,670 - HP15_1012 0.53 +0.9
1,025,677 + HP15_1012 0.54 +2.4
1,025,696 + HP15_1012 0.55 +1.5
1,025,721 + HP15_1012 0.57 +2.0
1,025,845 - HP15_1012 0.66 -1.1
1,025,888 + HP15_1012 0.69 +1.2
1,025,915 + HP15_1012 0.71 +2.9
1,025,979 + HP15_1012 0.75 +2.2
1,025,987 - HP15_1012 0.76 -1.3
1,025,987 - HP15_1012 0.76 +0.6
1,026,065 + HP15_1012 0.81 +2.0
1,026,072 + HP15_1012 0.82 +1.3
1,026,111 + HP15_1012 0.84 +2.4
1,026,178 + HP15_1012 0.89 +0.1
1,026,186 - HP15_1012 0.90 -0.4
1,026,228 - +0.4
1,026,228 - +0.8
1,026,228 - +1.8
1,026,228 - +0.2
1,026,230 + +0.2
1,026,230 + -2.3
1,026,251 + +3.1
1,026,278 + -0.6
1,026,348 + -0.0
1,026,358 + -0.2
1,026,436 + HP15_1013 0.12 +0.8
1,026,439 - HP15_1013 0.13 +2.3
1,026,538 - HP15_1013 0.25 -0.6
1,026,575 + HP15_1013 0.29 +0.3
1,026,593 - HP15_1013 0.31 -0.5
1,026,607 - HP15_1013 0.33 +1.8
1,026,612 - HP15_1013 0.34 -1.4
1,026,729 + HP15_1013 0.48 +0.6
1,026,738 + HP15_1013 0.49 +2.5
1,026,740 + HP15_1013 0.49 -2.0
1,026,747 - HP15_1013 0.50 +1.9
1,026,748 - HP15_1013 0.50 -2.6
1,026,855 + HP15_1013 0.63 -2.1
1,026,888 - HP15_1013 0.67 -1.2
1,026,915 + HP15_1013 0.70 -0.6
1,026,940 + HP15_1013 0.73 -0.5
1,027,057 + HP15_1013 0.87 +2.2
1,027,060 - HP15_1013 0.88 +2.1
1,027,062 + HP15_1013 0.88 +1.2
1,027,065 - HP15_1013 0.88 +1.6
1,027,115 + +0.2
1,027,156 + -0.4
1,027,190 + +1.9
1,027,199 + +2.4

Or see this region's nucleotide sequence