Experiment: L-Arginine as (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_988 and HP15_989 are separated by 245 nucleotides HP15_989 and HP15_990 are separated by 27 nucleotides HP15_990 and HP15_992 are separated by 21 nucleotides HP15_992 and HP15_991 are separated by 18 nucleotides
HP15_988: HP15_988 - ABC-type amino acid transport/signal transduction systems, periplasmic component/domain protein, at 997,559 to 998,374
_988
HP15_989: HP15_989 - conserved hypothetical protein, at 998,620 to 998,844
_989
HP15_990: HP15_990 - taurine catabolism dioxygenase TauD/TfdA, at 998,872 to 999,963
_990
HP15_992: HP15_992 - hypothetical protein, at 999,985 to 1,000,125
_992
HP15_991: HP15_991 - substrate-binding region of ABC-type glycine betaine transport system, at 1,000,144 to 1,001,061
_991
Position (kb) 998
999
1000 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 997.890 kb on + strand, within HP15_988 at 997.895 kb on + strand, within HP15_988 at 997.952 kb on - strand, within HP15_988 at 997.959 kb on + strand, within HP15_988 at 998.018 kb on - strand, within HP15_988 at 998.100 kb on + strand, within HP15_988 at 998.108 kb on - strand, within HP15_988 at 998.283 kb on + strand, within HP15_988 at 998.339 kb on + strand at 998.383 kb on - strand at 998.392 kb on + strand at 998.474 kb on + strand at 998.482 kb on - strand at 998.482 kb on - strand at 998.482 kb on - strand at 998.539 kb on - strand at 998.625 kb on - strand at 998.716 kb on + strand, within HP15_989 at 998.717 kb on + strand, within HP15_989 at 998.790 kb on - strand, within HP15_989 at 998.957 kb on - strand at 998.957 kb on - strand at 998.990 kb on - strand, within HP15_990 at 999.035 kb on - strand, within HP15_990 at 999.233 kb on - strand, within HP15_990 at 999.233 kb on - strand, within HP15_990 at 999.233 kb on - strand, within HP15_990 at 999.237 kb on + strand, within HP15_990 at 999.242 kb on + strand, within HP15_990 at 999.295 kb on + strand, within HP15_990 at 999.311 kb on + strand, within HP15_990 at 999.329 kb on - strand, within HP15_990 at 999.366 kb on + strand, within HP15_990 at 999.460 kb on - strand, within HP15_990 at 999.597 kb on + strand, within HP15_990 at 999.597 kb on + strand, within HP15_990 at 999.605 kb on - strand, within HP15_990 at 999.605 kb on - strand, within HP15_990 at 999.641 kb on - strand, within HP15_990 at 999.643 kb on - strand, within HP15_990 at 999.860 kb on - strand at 999.892 kb on + strand at 999.900 kb on - strand at 999.906 kb on + strand at 999.930 kb on + strand at 999.944 kb on + strand at 1000.136 kb on + strand at 1000.286 kb on + strand, within HP15_991 at 1000.487 kb on - strand, within HP15_991 at 1000.536 kb on + strand, within HP15_991 at 1000.621 kb on + strand, within HP15_991 at 1000.621 kb on + strand, within HP15_991 at 1000.629 kb on - strand, within HP15_991 at 1000.648 kb on - strand, within HP15_991 at 1000.688 kb on - strand, within HP15_991 at 1000.726 kb on - strand, within HP15_991 at 1000.872 kb on + strand, within HP15_991 at 1000.880 kb on - strand, within HP15_991
Per-strain Table
Position Strand Gene LocusTag Fraction L-Arginine as (N) remove 997,890 + HP15_988 0.41 +1.3 997,895 + HP15_988 0.41 -0.2 997,952 - HP15_988 0.48 +1.6 997,959 + HP15_988 0.49 -2.1 998,018 - HP15_988 0.56 +0.6 998,100 + HP15_988 0.66 -0.4 998,108 - HP15_988 0.67 +3.0 998,283 + HP15_988 0.89 +0.1 998,339 + +1.6 998,383 - -0.4 998,392 + -0.5 998,474 + -0.0 998,482 - +0.4 998,482 - +0.7 998,482 - -0.1 998,539 - +2.0 998,625 - +2.2 998,716 + HP15_989 0.43 -1.9 998,717 + HP15_989 0.43 -1.1 998,790 - HP15_989 0.76 +1.7 998,957 - -0.2 998,957 - -1.4 998,990 - HP15_990 0.11 -2.5 999,035 - HP15_990 0.15 +1.7 999,233 - HP15_990 0.33 +2.2 999,233 - HP15_990 0.33 +0.4 999,233 - HP15_990 0.33 -2.8 999,237 + HP15_990 0.33 -0.1 999,242 + HP15_990 0.34 -1.1 999,295 + HP15_990 0.39 +2.3 999,311 + HP15_990 0.40 +0.3 999,329 - HP15_990 0.42 +1.7 999,366 + HP15_990 0.45 +2.1 999,460 - HP15_990 0.54 +0.2 999,597 + HP15_990 0.66 +0.2 999,597 + HP15_990 0.66 -0.5 999,605 - HP15_990 0.67 +2.2 999,605 - HP15_990 0.67 +3.1 999,641 - HP15_990 0.70 +2.1 999,643 - HP15_990 0.71 -1.5 999,860 - +2.3 999,892 + -0.1 999,900 - +1.4 999,906 + +1.9 999,930 + +0.3 999,944 + +0.4 1,000,136 + -0.5 1,000,286 + HP15_991 0.15 +0.1 1,000,487 - HP15_991 0.37 +1.9 1,000,536 + HP15_991 0.43 -1.4 1,000,621 + HP15_991 0.52 -0.6 1,000,621 + HP15_991 0.52 +1.9 1,000,629 - HP15_991 0.53 -2.9 1,000,648 - HP15_991 0.55 +1.4 1,000,688 - HP15_991 0.59 -0.2 1,000,726 - HP15_991 0.63 -1.1 1,000,872 + HP15_991 0.79 -1.8 1,000,880 - HP15_991 0.80 -0.8
Or see this region's nucleotide sequence