Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_3113

Experiment: MoYLS4 with Nalidixic 0.0078125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_3111 and DvMF_3112 are separated by 192 nucleotidesDvMF_3112 and DvMF_3113 are separated by 34 nucleotidesDvMF_3113 and DvMF_3114 are separated by 157 nucleotides DvMF_3111: DvMF_3111 - MATE efflux family protein (RefSeq), at 3,923,820 to 3,925,289 _3111 DvMF_3112: DvMF_3112 - protein of unknown function DUF77 (RefSeq), at 3,925,482 to 3,925,784 _3112 DvMF_3113: DvMF_3113 - protein of unknown function DUF115 (RefSeq), at 3,925,819 to 3,927,588 _3113 DvMF_3114: DvMF_3114 - hypothetical protein (RefSeq), at 3,927,746 to 3,930,994 _3114 Position (kb) 3925 3926 3927 3928Strain fitness (log2 ratio) -1 0 1at 3925.283 kb on + strandat 3925.487 kb on - strandat 3925.573 kb on - strand, within DvMF_3112at 3925.876 kb on - strandat 3925.977 kb on + strandat 3926.055 kb on + strand, within DvMF_3113at 3926.094 kb on - strand, within DvMF_3113at 3926.166 kb on + strand, within DvMF_3113at 3926.256 kb on - strand, within DvMF_3113at 3926.287 kb on - strand, within DvMF_3113at 3926.322 kb on + strand, within DvMF_3113at 3926.353 kb on + strand, within DvMF_3113at 3926.366 kb on + strand, within DvMF_3113at 3926.482 kb on + strand, within DvMF_3113at 3926.541 kb on - strand, within DvMF_3113at 3926.576 kb on - strand, within DvMF_3113at 3926.576 kb on - strand, within DvMF_3113at 3926.634 kb on + strand, within DvMF_3113at 3926.634 kb on + strand, within DvMF_3113at 3926.937 kb on - strand, within DvMF_3113at 3927.244 kb on + strand, within DvMF_3113at 3927.356 kb on + strand, within DvMF_3113at 3927.527 kb on + strandat 3927.535 kb on - strandat 3927.657 kb on + strandat 3927.827 kb on - strandat 3928.284 kb on + strand, within DvMF_3114at 3928.300 kb on + strand, within DvMF_3114at 3928.302 kb on - strand, within DvMF_3114at 3928.429 kb on - strand, within DvMF_3114

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Nalidixic 0.0078125 mg/ml
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3,925,283 + -0.0
3,925,487 - -0.3
3,925,573 - DvMF_3112 0.30 -0.4
3,925,876 - -1.1
3,925,977 + -0.4
3,926,055 + DvMF_3113 0.13 -0.9
3,926,094 - DvMF_3113 0.16 -0.4
3,926,166 + DvMF_3113 0.20 -0.3
3,926,256 - DvMF_3113 0.25 +0.0
3,926,287 - DvMF_3113 0.26 -0.5
3,926,322 + DvMF_3113 0.28 -0.7
3,926,353 + DvMF_3113 0.30 -1.0
3,926,366 + DvMF_3113 0.31 -1.1
3,926,482 + DvMF_3113 0.37 -1.2
3,926,541 - DvMF_3113 0.41 -0.4
3,926,576 - DvMF_3113 0.43 +0.3
3,926,576 - DvMF_3113 0.43 -0.7
3,926,634 + DvMF_3113 0.46 -0.5
3,926,634 + DvMF_3113 0.46 -0.6
3,926,937 - DvMF_3113 0.63 -0.4
3,927,244 + DvMF_3113 0.81 -0.8
3,927,356 + DvMF_3113 0.87 +0.2
3,927,527 + -0.2
3,927,535 - -0.4
3,927,657 + -0.6
3,927,827 - -1.2
3,928,284 + DvMF_3114 0.17 -1.6
3,928,300 + DvMF_3114 0.17 -0.7
3,928,302 - DvMF_3114 0.17 -0.2
3,928,429 - DvMF_3114 0.21 -0.6

Or see this region's nucleotide sequence