Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2946

Experiment: MoYLS4 with Nalidixic 0.0078125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2944 and DvMF_2945 are separated by 151 nucleotidesDvMF_2945 and DvMF_2946 are separated by 145 nucleotidesDvMF_2946 and DvMF_2947 are separated by 21 nucleotidesDvMF_2947 and DvMF_2948 are separated by 227 nucleotides DvMF_2944: DvMF_2944 - hypothetical protein (RefSeq), at 3,715,860 to 3,716,942 _2944 DvMF_2945: DvMF_2945 - Cupin 2 conserved barrel domain protein (RefSeq), at 3,717,094 to 3,717,591 _2945 DvMF_2946: DvMF_2946 - hypothetical protein (RefSeq), at 3,717,737 to 3,718,792 _2946 DvMF_2947: DvMF_2947 - Carboxymuconolactone decarboxylase (RefSeq), at 3,718,814 to 3,719,548 _2947 DvMF_2948: DvMF_2948 - transcriptional regulator, AraC family (RefSeq), at 3,719,776 to 3,720,675 _2948 Position (kb) 3717 3718 3719Strain fitness (log2 ratio) -1 0 1at 3716.745 kb on + strand, within DvMF_2944at 3716.824 kb on - strand, within DvMF_2944at 3716.839 kb on - strandat 3717.074 kb on - strandat 3717.106 kb on + strandat 3717.357 kb on + strand, within DvMF_2945at 3717.357 kb on + strand, within DvMF_2945at 3717.417 kb on - strand, within DvMF_2945at 3717.424 kb on + strand, within DvMF_2945at 3717.458 kb on + strand, within DvMF_2945at 3717.603 kb on + strandat 3718.037 kb on + strand, within DvMF_2946at 3718.041 kb on - strand, within DvMF_2946at 3718.184 kb on + strand, within DvMF_2946at 3718.308 kb on - strand, within DvMF_2946at 3718.328 kb on - strand, within DvMF_2946at 3718.704 kb on - strandat 3718.970 kb on + strand, within DvMF_2947at 3718.978 kb on - strand, within DvMF_2947at 3718.994 kb on + strand, within DvMF_2947at 3719.049 kb on - strand, within DvMF_2947at 3719.113 kb on - strand, within DvMF_2947at 3719.125 kb on - strand, within DvMF_2947at 3719.126 kb on - strand, within DvMF_2947at 3719.187 kb on + strand, within DvMF_2947at 3719.250 kb on - strand, within DvMF_2947at 3719.670 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Nalidixic 0.0078125 mg/ml
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3,716,745 + DvMF_2944 0.82 -0.5
3,716,824 - DvMF_2944 0.89 -0.7
3,716,839 - -0.4
3,717,074 - -0.2
3,717,106 + -1.3
3,717,357 + DvMF_2945 0.53 +0.4
3,717,357 + DvMF_2945 0.53 +0.4
3,717,417 - DvMF_2945 0.65 -0.6
3,717,424 + DvMF_2945 0.66 -0.3
3,717,458 + DvMF_2945 0.73 +0.4
3,717,603 + -0.5
3,718,037 + DvMF_2946 0.28 -0.5
3,718,041 - DvMF_2946 0.29 +0.4
3,718,184 + DvMF_2946 0.42 -0.2
3,718,308 - DvMF_2946 0.54 -0.3
3,718,328 - DvMF_2946 0.56 -0.7
3,718,704 - -0.8
3,718,970 + DvMF_2947 0.21 +0.3
3,718,978 - DvMF_2947 0.22 -1.1
3,718,994 + DvMF_2947 0.24 -0.2
3,719,049 - DvMF_2947 0.32 -0.6
3,719,113 - DvMF_2947 0.41 -0.7
3,719,125 - DvMF_2947 0.42 -0.6
3,719,126 - DvMF_2947 0.42 +0.3
3,719,187 + DvMF_2947 0.51 -0.3
3,719,250 - DvMF_2947 0.59 -0.3
3,719,670 + -0.4

Or see this region's nucleotide sequence