Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2945

Experiment: MoYLS4 with Nalidixic 0.0078125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2944 and DvMF_2945 are separated by 151 nucleotidesDvMF_2945 and DvMF_2946 are separated by 145 nucleotides DvMF_2944: DvMF_2944 - hypothetical protein (RefSeq), at 3,715,860 to 3,716,942 _2944 DvMF_2945: DvMF_2945 - Cupin 2 conserved barrel domain protein (RefSeq), at 3,717,094 to 3,717,591 _2945 DvMF_2946: DvMF_2946 - hypothetical protein (RefSeq), at 3,717,737 to 3,718,792 _2946 Position (kb) 3717 3718Strain fitness (log2 ratio) -1 0 1at 3716.300 kb on + strand, within DvMF_2944at 3716.528 kb on + strand, within DvMF_2944at 3716.617 kb on + strand, within DvMF_2944at 3716.618 kb on + strand, within DvMF_2944at 3716.618 kb on + strand, within DvMF_2944at 3716.675 kb on + strand, within DvMF_2944at 3716.745 kb on + strand, within DvMF_2944at 3716.824 kb on - strand, within DvMF_2944at 3716.839 kb on - strandat 3717.074 kb on - strandat 3717.106 kb on + strandat 3717.357 kb on + strand, within DvMF_2945at 3717.357 kb on + strand, within DvMF_2945at 3717.417 kb on - strand, within DvMF_2945at 3717.424 kb on + strand, within DvMF_2945at 3717.458 kb on + strand, within DvMF_2945at 3717.603 kb on + strandat 3718.037 kb on + strand, within DvMF_2946at 3718.041 kb on - strand, within DvMF_2946at 3718.184 kb on + strand, within DvMF_2946at 3718.308 kb on - strand, within DvMF_2946at 3718.328 kb on - strand, within DvMF_2946

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Nalidixic 0.0078125 mg/ml
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3,716,300 + DvMF_2944 0.41 -0.0
3,716,528 + DvMF_2944 0.62 -0.1
3,716,617 + DvMF_2944 0.70 -0.3
3,716,618 + DvMF_2944 0.70 -0.3
3,716,618 + DvMF_2944 0.70 -0.1
3,716,675 + DvMF_2944 0.75 -0.3
3,716,745 + DvMF_2944 0.82 -0.5
3,716,824 - DvMF_2944 0.89 -0.7
3,716,839 - -0.4
3,717,074 - -0.2
3,717,106 + -1.3
3,717,357 + DvMF_2945 0.53 +0.4
3,717,357 + DvMF_2945 0.53 +0.4
3,717,417 - DvMF_2945 0.65 -0.6
3,717,424 + DvMF_2945 0.66 -0.3
3,717,458 + DvMF_2945 0.73 +0.4
3,717,603 + -0.5
3,718,037 + DvMF_2946 0.28 -0.5
3,718,041 - DvMF_2946 0.29 +0.4
3,718,184 + DvMF_2946 0.42 -0.2
3,718,308 - DvMF_2946 0.54 -0.3
3,718,328 - DvMF_2946 0.56 -0.7

Or see this region's nucleotide sequence