Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2878

Experiment: MoYLS4 with Nalidixic 0.0078125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2877 and DvMF_2878 are separated by 3 nucleotidesDvMF_2878 and DvMF_2879 are separated by 54 nucleotidesDvMF_2879 and DvMF_2880 are separated by 97 nucleotides DvMF_2877: DvMF_2877 - phosphoenolpyruvate-protein phosphotransferase (RefSeq), at 3,634,888 to 3,636,663 _2877 DvMF_2878: DvMF_2878 - Phosphotransferase system, phosphocarrier protein HPr (RefSeq), at 3,636,667 to 3,636,963 _2878 DvMF_2879: DvMF_2879 - PTS system mannose/fructose/sorbose family IID component (RefSeq), at 3,637,018 to 3,637,797 _2879 DvMF_2880: DvMF_2880 - Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase (RefSeq), at 3,637,895 to 3,638,734 _2880 Position (kb) 3636 3637Strain fitness (log2 ratio) -2 -1 0 1at 3635.770 kb on + strand, within DvMF_2877at 3635.833 kb on - strand, within DvMF_2877at 3635.968 kb on - strand, within DvMF_2877at 3636.061 kb on - strand, within DvMF_2877at 3636.144 kb on + strand, within DvMF_2877at 3636.152 kb on - strand, within DvMF_2877at 3636.177 kb on - strand, within DvMF_2877at 3636.195 kb on + strand, within DvMF_2877at 3636.203 kb on - strand, within DvMF_2877at 3636.212 kb on + strand, within DvMF_2877at 3636.467 kb on - strand, within DvMF_2877at 3636.527 kb on - strandat 3636.664 kb on + strandat 3636.664 kb on + strandat 3636.918 kb on + strand, within DvMF_2878at 3636.926 kb on - strand, within DvMF_2878at 3637.052 kb on + strandat 3637.321 kb on + strand, within DvMF_2879at 3637.421 kb on + strand, within DvMF_2879at 3637.444 kb on + strand, within DvMF_2879at 3637.479 kb on + strand, within DvMF_2879at 3637.900 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Nalidixic 0.0078125 mg/ml
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3,635,770 + DvMF_2877 0.50 -1.3
3,635,833 - DvMF_2877 0.53 -1.2
3,635,968 - DvMF_2877 0.61 -1.5
3,636,061 - DvMF_2877 0.66 -1.7
3,636,144 + DvMF_2877 0.71 -1.3
3,636,152 - DvMF_2877 0.71 -1.3
3,636,177 - DvMF_2877 0.73 -1.4
3,636,195 + DvMF_2877 0.74 -1.6
3,636,203 - DvMF_2877 0.74 -1.6
3,636,212 + DvMF_2877 0.75 -2.2
3,636,467 - DvMF_2877 0.89 -1.5
3,636,527 - -1.6
3,636,664 + -1.1
3,636,664 + -1.6
3,636,918 + DvMF_2878 0.85 -2.3
3,636,926 - DvMF_2878 0.87 -2.3
3,637,052 + +0.2
3,637,321 + DvMF_2879 0.39 +0.2
3,637,421 + DvMF_2879 0.52 -0.1
3,637,444 + DvMF_2879 0.55 +1.1
3,637,479 + DvMF_2879 0.59 +0.2
3,637,900 - -0.2

Or see this region's nucleotide sequence