Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2852

Experiment: MoYLS4 with Nalidixic 0.0078125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2851 and DvMF_2852 are separated by 421 nucleotidesDvMF_2852 and DvMF_2853 overlap by 4 nucleotidesDvMF_2853 and DvMF_2854 are separated by 89 nucleotidesDvMF_2854 and DvMF_2855 overlap by 11 nucleotides DvMF_2851: DvMF_2851 - diguanylate cyclase and serine/threonine protein kinase with TPR repeats (RefSeq), at 3,603,938 to 3,606,361 _2851 DvMF_2852: DvMF_2852 - nitroreductase (RefSeq), at 3,606,783 to 3,607,319 _2852 DvMF_2853: DvMF_2853 - beta-lactamase domain protein (RefSeq), at 3,607,316 to 3,607,948 _2853 DvMF_2854: DvMF_2854 - hypothetical protein (RefSeq), at 3,608,038 to 3,608,229 _2854 DvMF_2855: DvMF_2855 - hypothetical protein (RefSeq), at 3,608,219 to 3,608,392 _2855 Position (kb) 3606 3607 3608Strain fitness (log2 ratio) -1 0 1at 3606.063 kb on + strand, within DvMF_2851at 3606.081 kb on - strand, within DvMF_2851at 3606.240 kb on - strandat 3606.301 kb on - strandat 3606.401 kb on - strandat 3606.577 kb on - strandat 3606.655 kb on + strandat 3607.201 kb on + strand, within DvMF_2852at 3607.460 kb on - strand, within DvMF_2853at 3607.498 kb on + strand, within DvMF_2853at 3607.520 kb on + strand, within DvMF_2853at 3607.585 kb on + strand, within DvMF_2853at 3607.588 kb on - strand, within DvMF_2853at 3607.632 kb on - strand, within DvMF_2853at 3607.690 kb on - strand, within DvMF_2853at 3607.698 kb on + strand, within DvMF_2853at 3607.735 kb on + strand, within DvMF_2853at 3607.977 kb on + strandat 3607.977 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Nalidixic 0.0078125 mg/ml
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3,606,063 + DvMF_2851 0.88 -0.1
3,606,081 - DvMF_2851 0.88 -1.1
3,606,240 - -0.4
3,606,301 - -0.7
3,606,401 - -0.1
3,606,577 - -1.1
3,606,655 + +0.8
3,607,201 + DvMF_2852 0.78 +0.0
3,607,460 - DvMF_2853 0.23 -0.6
3,607,498 + DvMF_2853 0.29 -0.3
3,607,520 + DvMF_2853 0.32 +0.3
3,607,585 + DvMF_2853 0.42 +0.5
3,607,588 - DvMF_2853 0.43 +0.2
3,607,632 - DvMF_2853 0.50 +1.0
3,607,690 - DvMF_2853 0.59 +0.2
3,607,698 + DvMF_2853 0.60 -0.0
3,607,735 + DvMF_2853 0.66 -0.4
3,607,977 + +0.4
3,607,977 + -0.2

Or see this region's nucleotide sequence