Experiment: MoYLS4 with Nalidixic 0.0078125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2851 and DvMF_2852 are separated by 421 nucleotides DvMF_2852 and DvMF_2853 overlap by 4 nucleotides DvMF_2853 and DvMF_2854 are separated by 89 nucleotides DvMF_2854 and DvMF_2855 overlap by 11 nucleotides
DvMF_2851: DvMF_2851 - diguanylate cyclase and serine/threonine protein kinase with TPR repeats (RefSeq), at 3,603,938 to 3,606,361
_2851
DvMF_2852: DvMF_2852 - nitroreductase (RefSeq), at 3,606,783 to 3,607,319
_2852
DvMF_2853: DvMF_2853 - beta-lactamase domain protein (RefSeq), at 3,607,316 to 3,607,948
_2853
DvMF_2854: DvMF_2854 - hypothetical protein (RefSeq), at 3,608,038 to 3,608,229
_2854
DvMF_2855: DvMF_2855 - hypothetical protein (RefSeq), at 3,608,219 to 3,608,392
_2855
Position (kb)
3606
3607
3608 Strain fitness (log2 ratio)
-1
0
1 at 3606.063 kb on + strand, within DvMF_2851 at 3606.081 kb on - strand, within DvMF_2851 at 3606.240 kb on - strand at 3606.301 kb on - strand at 3606.401 kb on - strand at 3606.577 kb on - strand at 3606.655 kb on + strand at 3607.201 kb on + strand, within DvMF_2852 at 3607.460 kb on - strand, within DvMF_2853 at 3607.498 kb on + strand, within DvMF_2853 at 3607.520 kb on + strand, within DvMF_2853 at 3607.585 kb on + strand, within DvMF_2853 at 3607.588 kb on - strand, within DvMF_2853 at 3607.632 kb on - strand, within DvMF_2853 at 3607.690 kb on - strand, within DvMF_2853 at 3607.698 kb on + strand, within DvMF_2853 at 3607.735 kb on + strand, within DvMF_2853 at 3607.977 kb on + strand at 3607.977 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Nalidixic 0.0078125 mg/ml remove 3,606,063 + DvMF_2851 0.88 -0.1 3,606,081 - DvMF_2851 0.88 -1.1 3,606,240 - -0.4 3,606,301 - -0.7 3,606,401 - -0.1 3,606,577 - -1.1 3,606,655 + +0.8 3,607,201 + DvMF_2852 0.78 +0.0 3,607,460 - DvMF_2853 0.23 -0.6 3,607,498 + DvMF_2853 0.29 -0.3 3,607,520 + DvMF_2853 0.32 +0.3 3,607,585 + DvMF_2853 0.42 +0.5 3,607,588 - DvMF_2853 0.43 +0.2 3,607,632 - DvMF_2853 0.50 +1.0 3,607,690 - DvMF_2853 0.59 +0.2 3,607,698 + DvMF_2853 0.60 -0.0 3,607,735 + DvMF_2853 0.66 -0.4 3,607,977 + +0.4 3,607,977 + -0.2
Or see this region's nucleotide sequence