Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2739

Experiment: MoYLS4 with Nalidixic 0.0078125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2738 and DvMF_2739 are separated by 2 nucleotidesDvMF_2739 and DvMF_2740 are separated by 12 nucleotidesDvMF_2740 and DvMF_2741 overlap by 4 nucleotides DvMF_2738: DvMF_2738 - type II secretion system protein E (RefSeq), at 3,463,715 to 3,465,589 _2738 DvMF_2739: DvMF_2739 - response regulator receiver protein (RefSeq), at 3,465,592 to 3,467,037 _2739 DvMF_2740: DvMF_2740 - hypothetical protein (RefSeq), at 3,467,050 to 3,467,376 _2740 DvMF_2741: DvMF_2741 - type II and III secretion system protein (RefSeq), at 3,467,373 to 3,468,854 _2741 Position (kb) 3465 3466 3467 3468Strain fitness (log2 ratio) -1 0 1at 3464.728 kb on + strand, within DvMF_2738at 3464.781 kb on - strand, within DvMF_2738at 3465.015 kb on + strand, within DvMF_2738at 3465.194 kb on + strand, within DvMF_2738at 3465.399 kb on - strand, within DvMF_2738at 3465.417 kb on - strandat 3465.453 kb on + strandat 3465.535 kb on - strandat 3465.597 kb on + strandat 3465.851 kb on + strand, within DvMF_2739at 3465.938 kb on - strand, within DvMF_2739at 3466.248 kb on + strand, within DvMF_2739at 3466.248 kb on + strand, within DvMF_2739at 3466.256 kb on - strand, within DvMF_2739at 3466.264 kb on - strand, within DvMF_2739at 3466.444 kb on + strand, within DvMF_2739at 3466.846 kb on + strand, within DvMF_2739at 3467.219 kb on + strand, within DvMF_2740at 3467.260 kb on - strand, within DvMF_2740at 3467.386 kb on + strandat 3467.393 kb on - strandat 3467.459 kb on - strandat 3467.619 kb on - strand, within DvMF_2741at 3467.748 kb on + strand, within DvMF_2741

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Nalidixic 0.0078125 mg/ml
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3,464,728 + DvMF_2738 0.54 -0.5
3,464,781 - DvMF_2738 0.57 -0.4
3,465,015 + DvMF_2738 0.69 +0.0
3,465,194 + DvMF_2738 0.79 +0.3
3,465,399 - DvMF_2738 0.90 -0.1
3,465,417 - -0.2
3,465,453 + -0.6
3,465,535 - -1.4
3,465,597 + -1.1
3,465,851 + DvMF_2739 0.18 -0.6
3,465,938 - DvMF_2739 0.24 -0.5
3,466,248 + DvMF_2739 0.45 -1.4
3,466,248 + DvMF_2739 0.45 -0.3
3,466,256 - DvMF_2739 0.46 -1.5
3,466,264 - DvMF_2739 0.46 -0.7
3,466,444 + DvMF_2739 0.59 -1.1
3,466,846 + DvMF_2739 0.87 -0.6
3,467,219 + DvMF_2740 0.52 -1.4
3,467,260 - DvMF_2740 0.64 -1.0
3,467,386 + -0.6
3,467,393 - -0.5
3,467,459 - -0.7
3,467,619 - DvMF_2741 0.17 -0.1
3,467,748 + DvMF_2741 0.25 -0.5

Or see this region's nucleotide sequence