Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2738

Experiment: MoYLS4 with Nalidixic 0.0078125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2737 and DvMF_2738 are separated by 32 nucleotidesDvMF_2738 and DvMF_2739 are separated by 2 nucleotides DvMF_2737: DvMF_2737 - type II secretion system protein (RefSeq), at 3,462,717 to 3,463,682 _2737 DvMF_2738: DvMF_2738 - type II secretion system protein E (RefSeq), at 3,463,715 to 3,465,589 _2738 DvMF_2739: DvMF_2739 - response regulator receiver protein (RefSeq), at 3,465,592 to 3,467,037 _2739 Position (kb) 3463 3464 3465 3466Strain fitness (log2 ratio) -1 0 1at 3462.799 kb on - strandat 3462.828 kb on - strand, within DvMF_2737at 3462.870 kb on + strand, within DvMF_2737at 3462.937 kb on + strand, within DvMF_2737at 3463.069 kb on - strand, within DvMF_2737at 3463.503 kb on - strand, within DvMF_2737at 3463.567 kb on - strand, within DvMF_2737at 3463.616 kb on + strandat 3464.213 kb on + strand, within DvMF_2738at 3464.351 kb on - strand, within DvMF_2738at 3464.728 kb on + strand, within DvMF_2738at 3464.781 kb on - strand, within DvMF_2738at 3465.015 kb on + strand, within DvMF_2738at 3465.194 kb on + strand, within DvMF_2738at 3465.399 kb on - strand, within DvMF_2738at 3465.417 kb on - strandat 3465.453 kb on + strandat 3465.535 kb on - strandat 3465.597 kb on + strandat 3465.851 kb on + strand, within DvMF_2739at 3465.938 kb on - strand, within DvMF_2739at 3466.248 kb on + strand, within DvMF_2739at 3466.248 kb on + strand, within DvMF_2739at 3466.256 kb on - strand, within DvMF_2739at 3466.264 kb on - strand, within DvMF_2739at 3466.444 kb on + strand, within DvMF_2739

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Nalidixic 0.0078125 mg/ml
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3,462,799 - -0.3
3,462,828 - DvMF_2737 0.11 -0.3
3,462,870 + DvMF_2737 0.16 -0.1
3,462,937 + DvMF_2737 0.23 -0.3
3,463,069 - DvMF_2737 0.36 -0.0
3,463,503 - DvMF_2737 0.81 -1.7
3,463,567 - DvMF_2737 0.88 +1.7
3,463,616 + +0.1
3,464,213 + DvMF_2738 0.27 -0.8
3,464,351 - DvMF_2738 0.34 -0.1
3,464,728 + DvMF_2738 0.54 -0.5
3,464,781 - DvMF_2738 0.57 -0.4
3,465,015 + DvMF_2738 0.69 +0.0
3,465,194 + DvMF_2738 0.79 +0.3
3,465,399 - DvMF_2738 0.90 -0.1
3,465,417 - -0.2
3,465,453 + -0.6
3,465,535 - -1.4
3,465,597 + -1.1
3,465,851 + DvMF_2739 0.18 -0.6
3,465,938 - DvMF_2739 0.24 -0.5
3,466,248 + DvMF_2739 0.45 -1.4
3,466,248 + DvMF_2739 0.45 -0.3
3,466,256 - DvMF_2739 0.46 -1.5
3,466,264 - DvMF_2739 0.46 -0.7
3,466,444 + DvMF_2739 0.59 -1.1

Or see this region's nucleotide sequence