Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2737

Experiment: MoYLS4 with Nalidixic 0.0078125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2736 and DvMF_2737 are separated by 13 nucleotidesDvMF_2737 and DvMF_2738 are separated by 32 nucleotides DvMF_2736: DvMF_2736 - type II secretion system protein (RefSeq), at 3,461,723 to 3,462,703 _2736 DvMF_2737: DvMF_2737 - type II secretion system protein (RefSeq), at 3,462,717 to 3,463,682 _2737 DvMF_2738: DvMF_2738 - type II secretion system protein E (RefSeq), at 3,463,715 to 3,465,589 _2738 Position (kb) 3462 3463 3464Strain fitness (log2 ratio) -2 -1 0 1at 3461.802 kb on + strandat 3461.892 kb on - strand, within DvMF_2736at 3462.034 kb on + strand, within DvMF_2736at 3462.116 kb on + strand, within DvMF_2736at 3462.124 kb on - strand, within DvMF_2736at 3462.266 kb on - strand, within DvMF_2736at 3462.278 kb on + strand, within DvMF_2736at 3462.348 kb on - strand, within DvMF_2736at 3462.348 kb on - strand, within DvMF_2736at 3462.454 kb on + strand, within DvMF_2736at 3462.551 kb on + strand, within DvMF_2736at 3462.634 kb on - strandat 3462.799 kb on - strandat 3462.828 kb on - strand, within DvMF_2737at 3462.870 kb on + strand, within DvMF_2737at 3462.937 kb on + strand, within DvMF_2737at 3463.069 kb on - strand, within DvMF_2737at 3463.503 kb on - strand, within DvMF_2737at 3463.567 kb on - strand, within DvMF_2737at 3463.616 kb on + strandat 3464.213 kb on + strand, within DvMF_2738at 3464.351 kb on - strand, within DvMF_2738

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Nalidixic 0.0078125 mg/ml
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3,461,802 + -0.3
3,461,892 - DvMF_2736 0.17 -0.7
3,462,034 + DvMF_2736 0.32 +1.4
3,462,116 + DvMF_2736 0.40 -0.5
3,462,124 - DvMF_2736 0.41 -0.2
3,462,266 - DvMF_2736 0.55 -0.4
3,462,278 + DvMF_2736 0.57 -0.5
3,462,348 - DvMF_2736 0.64 -0.0
3,462,348 - DvMF_2736 0.64 -0.1
3,462,454 + DvMF_2736 0.75 -0.2
3,462,551 + DvMF_2736 0.84 -1.9
3,462,634 - -0.3
3,462,799 - -0.3
3,462,828 - DvMF_2737 0.11 -0.3
3,462,870 + DvMF_2737 0.16 -0.1
3,462,937 + DvMF_2737 0.23 -0.3
3,463,069 - DvMF_2737 0.36 -0.0
3,463,503 - DvMF_2737 0.81 -1.7
3,463,567 - DvMF_2737 0.88 +1.7
3,463,616 + +0.1
3,464,213 + DvMF_2738 0.27 -0.8
3,464,351 - DvMF_2738 0.34 -0.1

Or see this region's nucleotide sequence