Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2637

Experiment: MoYLS4 with Nalidixic 0.0078125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_R0071 and DvMF_2637 are separated by 545 nucleotidesDvMF_2637 and DvMF_2638 are separated by 36 nucleotides DvMF_R0071: DvMF_R0071 - tRNA-Glu (RefSeq), at 3,333,078 to 3,333,154 _R0071 DvMF_2637: DvMF_2637 - diguanylate cyclase with extracellular sensor (RefSeq), at 3,333,700 to 3,335,124 _2637 DvMF_2638: DvMF_2638 - UDP-N-acetylglucosamine 2-epimerase (RefSeq), at 3,335,161 to 3,336,594 _2638 Position (kb) 3333 3334 3335 3336Strain fitness (log2 ratio) -2 -1 0 1at 3332.706 kb on - strandat 3332.924 kb on + strandat 3333.235 kb on + strandat 3333.255 kb on - strandat 3333.304 kb on + strandat 3333.354 kb on + strandat 3333.362 kb on - strandat 3333.504 kb on - strandat 3333.831 kb on - strandat 3333.898 kb on + strand, within DvMF_2637at 3334.211 kb on + strand, within DvMF_2637at 3334.230 kb on + strand, within DvMF_2637at 3334.238 kb on - strand, within DvMF_2637at 3334.450 kb on + strand, within DvMF_2637at 3334.458 kb on - strand, within DvMF_2637at 3334.633 kb on + strand, within DvMF_2637at 3334.641 kb on - strand, within DvMF_2637at 3334.980 kb on + strand, within DvMF_2637at 3334.980 kb on + strand, within DvMF_2637at 3334.997 kb on + strandat 3335.061 kb on - strandat 3335.074 kb on + strandat 3335.082 kb on - strandat 3335.082 kb on - strandat 3335.082 kb on - strandat 3335.082 kb on - strandat 3335.305 kb on + strand, within DvMF_2638at 3335.464 kb on + strand, within DvMF_2638at 3335.464 kb on + strand, within DvMF_2638at 3335.725 kb on + strand, within DvMF_2638at 3335.751 kb on + strand, within DvMF_2638at 3335.818 kb on - strand, within DvMF_2638at 3335.956 kb on + strand, within DvMF_2638

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Nalidixic 0.0078125 mg/ml
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3,332,706 - -0.4
3,332,924 + -0.4
3,333,235 + -0.6
3,333,255 - -0.5
3,333,304 + -0.6
3,333,354 + -0.9
3,333,362 - -0.9
3,333,504 - -0.3
3,333,831 - -0.5
3,333,898 + DvMF_2637 0.14 +1.4
3,334,211 + DvMF_2637 0.36 -1.9
3,334,230 + DvMF_2637 0.37 -0.5
3,334,238 - DvMF_2637 0.38 +0.3
3,334,450 + DvMF_2637 0.53 -1.1
3,334,458 - DvMF_2637 0.53 +0.3
3,334,633 + DvMF_2637 0.65 -0.7
3,334,641 - DvMF_2637 0.66 -1.2
3,334,980 + DvMF_2637 0.90 -0.6
3,334,980 + DvMF_2637 0.90 -0.5
3,334,997 + -0.2
3,335,061 - -0.6
3,335,074 + -0.4
3,335,082 - -1.1
3,335,082 - -0.4
3,335,082 - -0.5
3,335,082 - -0.3
3,335,305 + DvMF_2638 0.10 -0.7
3,335,464 + DvMF_2638 0.21 -0.8
3,335,464 + DvMF_2638 0.21 -0.1
3,335,725 + DvMF_2638 0.39 -0.4
3,335,751 + DvMF_2638 0.41 -0.2
3,335,818 - DvMF_2638 0.46 -0.4
3,335,956 + DvMF_2638 0.55 -0.2

Or see this region's nucleotide sequence