Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2170

Experiment: MoYLS4 with Nalidixic 0.0078125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2169 and DvMF_2170 are separated by 330 nucleotides DvMF_2169: DvMF_2169 - phospholipid/glycerol acyltransferase (RefSeq), at 2,705,195 to 2,707,183 _2169 DvMF_2170: DvMF_2170 - protein of unknown function DUF523 (RefSeq), at 2,707,514 to 2,707,936 _2170 Position (kb) 2707 2708Strain fitness (log2 ratio) -1 0 1at 2706.519 kb on - strand, within DvMF_2169at 2706.564 kb on + strand, within DvMF_2169at 2706.582 kb on - strand, within DvMF_2169at 2706.701 kb on + strand, within DvMF_2169at 2706.709 kb on - strand, within DvMF_2169at 2706.709 kb on - strand, within DvMF_2169at 2706.785 kb on + strand, within DvMF_2169at 2706.972 kb on + strand, within DvMF_2169at 2707.064 kb on - strandat 2707.259 kb on - strandat 2707.259 kb on - strandat 2707.259 kb on - strandat 2707.379 kb on - strandat 2707.482 kb on + strandat 2707.611 kb on + strand, within DvMF_2170at 2707.699 kb on - strand, within DvMF_2170at 2708.038 kb on - strandat 2708.183 kb on - strandat 2708.384 kb on - strandat 2708.473 kb on + strandat 2708.582 kb on - strandat 2708.737 kb on - strandat 2708.747 kb on + strandat 2708.755 kb on - strandat 2708.755 kb on - strandat 2708.755 kb on - strandat 2708.846 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Nalidixic 0.0078125 mg/ml
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2,706,519 - DvMF_2169 0.67 +0.4
2,706,564 + DvMF_2169 0.69 -0.3
2,706,582 - DvMF_2169 0.70 -0.4
2,706,701 + DvMF_2169 0.76 +0.1
2,706,709 - DvMF_2169 0.76 -0.7
2,706,709 - DvMF_2169 0.76 -0.6
2,706,785 + DvMF_2169 0.80 -0.5
2,706,972 + DvMF_2169 0.89 -0.4
2,707,064 - -0.4
2,707,259 - -0.9
2,707,259 - +0.1
2,707,259 - -0.8
2,707,379 - -0.4
2,707,482 + -0.3
2,707,611 + DvMF_2170 0.23 -0.3
2,707,699 - DvMF_2170 0.44 -0.2
2,708,038 - -0.4
2,708,183 - -0.6
2,708,384 - -0.8
2,708,473 + -0.5
2,708,582 - +0.3
2,708,737 - +0.2
2,708,747 + -0.0
2,708,755 - -0.5
2,708,755 - -0.0
2,708,755 - +0.4
2,708,846 + -0.2

Or see this region's nucleotide sequence