Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2125

Experiment: MoYLS4 with Nalidixic 0.0078125 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_2124 and DvMF_2125 are separated by 371 nucleotidesDvMF_2125 and DvMF_2126 are separated by 2 nucleotidesDvMF_2126 and DvMF_2127 are separated by 279 nucleotides DvMF_2124: DvMF_2124 - Lysine exporter protein (LYSE/YGGA) (RefSeq), at 2,643,382 to 2,644,011 _2124 DvMF_2125: DvMF_2125 - DEAD/DEAH box helicase domain protein (RefSeq), at 2,644,383 to 2,645,978 _2125 DvMF_2126: DvMF_2126 - Excinuclease ABC C subunit domain protein (RefSeq), at 2,645,981 to 2,646,298 _2126 DvMF_2127: DvMF_2127 - metallo-beta-lactamase family protein (RefSeq), at 2,646,578 to 2,647,318 _2127 Position (kb) 2644 2645 2646Strain fitness (log2 ratio) -1 0 1at 2643.465 kb on + strand, within DvMF_2124at 2643.930 kb on - strand, within DvMF_2124at 2643.963 kb on + strandat 2644.055 kb on + strandat 2644.063 kb on - strandat 2644.354 kb on + strandat 2644.362 kb on - strandat 2644.593 kb on - strand, within DvMF_2125at 2646.025 kb on - strand, within DvMF_2126at 2646.238 kb on - strand, within DvMF_2126at 2646.617 kb on - strandat 2646.627 kb on - strandat 2646.778 kb on - strand, within DvMF_2127

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Nalidixic 0.0078125 mg/ml
remove
2,643,465 + DvMF_2124 0.13 +0.1
2,643,930 - DvMF_2124 0.87 -0.1
2,643,963 + -0.2
2,644,055 + -0.0
2,644,063 - +0.3
2,644,354 + -0.1
2,644,362 - -0.2
2,644,593 - DvMF_2125 0.13 -0.0
2,646,025 - DvMF_2126 0.14 -0.1
2,646,238 - DvMF_2126 0.81 +0.0
2,646,617 - -0.1
2,646,627 - -0.2
2,646,778 - DvMF_2127 0.27 +0.0

Or see this region's nucleotide sequence