Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2089

Experiment: MoYLS4 with Nalidixic 0.0078125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2088 and DvMF_R0053 are separated by 550 nucleotidesDvMF_R0053 and DvMF_2089 are separated by 143 nucleotidesDvMF_2089 and DvMF_2090 are separated by 324 nucleotides DvMF_2088: DvMF_2088 - hypothetical protein (RefSeq), at 2,600,156 to 2,600,329 _2088 DvMF_R0053: DvMF_R0053 - tRNA-Ala (RefSeq), at 2,600,880 to 2,600,955 _R0053 DvMF_2089: DvMF_2089 - Rubrerythrin (RefSeq), at 2,601,099 to 2,601,707 _2089 DvMF_2090: DvMF_2090 - hypothetical protein (RefSeq), at 2,602,032 to 2,603,102 _2090 Position (kb) 2601 2602Strain fitness (log2 ratio) -1 0 1at 2600.336 kb on + strandat 2601.041 kb on + strandat 2601.049 kb on - strandat 2601.115 kb on - strandat 2601.161 kb on - strand, within DvMF_2089at 2601.199 kb on - strand, within DvMF_2089at 2601.239 kb on + strand, within DvMF_2089at 2601.295 kb on + strand, within DvMF_2089at 2601.322 kb on + strand, within DvMF_2089at 2601.344 kb on + strand, within DvMF_2089at 2601.353 kb on - strand, within DvMF_2089at 2601.444 kb on - strand, within DvMF_2089at 2601.779 kb on - strandat 2601.887 kb on + strandat 2601.920 kb on + strandat 2601.991 kb on + strandat 2602.302 kb on - strand, within DvMF_2090at 2602.385 kb on + strand, within DvMF_2090at 2602.482 kb on - strand, within DvMF_2090at 2602.626 kb on + strand, within DvMF_2090

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Nalidixic 0.0078125 mg/ml
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2,600,336 + +0.9
2,601,041 + +0.4
2,601,049 - +1.1
2,601,115 - +0.5
2,601,161 - DvMF_2089 0.10 +0.7
2,601,199 - DvMF_2089 0.16 +0.6
2,601,239 + DvMF_2089 0.23 -0.2
2,601,295 + DvMF_2089 0.32 +0.6
2,601,322 + DvMF_2089 0.37 +0.3
2,601,344 + DvMF_2089 0.40 -0.5
2,601,353 - DvMF_2089 0.42 -0.9
2,601,444 - DvMF_2089 0.57 +0.1
2,601,779 - +0.9
2,601,887 + +0.2
2,601,920 + +0.6
2,601,991 + +0.1
2,602,302 - DvMF_2090 0.25 +0.6
2,602,385 + DvMF_2090 0.33 +0.2
2,602,482 - DvMF_2090 0.42 -0.9
2,602,626 + DvMF_2090 0.55 +0.2

Or see this region's nucleotide sequence