Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1627

Experiment: MoYLS4 with Nalidixic 0.0078125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1625 and DvMF_1626 are separated by 269 nucleotidesDvMF_1626 and DvMF_1627 overlap by 4 nucleotidesDvMF_1627 and DvMF_1628 overlap by 4 nucleotides DvMF_1625: DvMF_1625 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 2,003,053 to 2,004,765 _1625 DvMF_1626: DvMF_1626 - Calcium-binding EF-hand-containing protein (RefSeq), at 2,005,035 to 2,005,523 _1626 DvMF_1627: DvMF_1627 - RND efflux system, outer membrane lipoprotein, NodT family (RefSeq), at 2,005,520 to 2,007,136 _1627 DvMF_1628: DvMF_1628 - efflux transporter, RND family, MFP subunit (RefSeq), at 2,007,133 to 2,008,284 _1628 Position (kb) 2005 2006 2007 2008Strain fitness (log2 ratio) -2 -1 0 1at 2004.821 kb on + strandat 2004.903 kb on + strandat 2005.119 kb on + strand, within DvMF_1626at 2005.119 kb on + strand, within DvMF_1626at 2005.292 kb on + strand, within DvMF_1626at 2005.352 kb on + strand, within DvMF_1626at 2005.410 kb on - strand, within DvMF_1626at 2005.527 kb on - strandat 2005.532 kb on + strandat 2005.632 kb on + strandat 2005.637 kb on + strandat 2005.650 kb on - strandat 2005.685 kb on + strand, within DvMF_1627at 2005.695 kb on + strand, within DvMF_1627at 2005.836 kb on - strand, within DvMF_1627at 2005.903 kb on - strand, within DvMF_1627at 2005.966 kb on + strand, within DvMF_1627at 2006.038 kb on + strand, within DvMF_1627at 2006.480 kb on - strand, within DvMF_1627at 2006.609 kb on + strand, within DvMF_1627at 2006.819 kb on + strand, within DvMF_1627at 2006.849 kb on - strand, within DvMF_1627at 2007.168 kb on + strandat 2007.177 kb on - strandat 2007.209 kb on - strandat 2007.283 kb on - strand, within DvMF_1628at 2007.349 kb on - strand, within DvMF_1628at 2007.686 kb on - strand, within DvMF_1628at 2007.765 kb on - strand, within DvMF_1628at 2007.772 kb on - strand, within DvMF_1628at 2007.799 kb on - strand, within DvMF_1628at 2008.068 kb on + strand, within DvMF_1628

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Nalidixic 0.0078125 mg/ml
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2,004,821 + -0.3
2,004,903 + -0.5
2,005,119 + DvMF_1626 0.17 -0.5
2,005,119 + DvMF_1626 0.17 -0.0
2,005,292 + DvMF_1626 0.53 +0.1
2,005,352 + DvMF_1626 0.65 +0.0
2,005,410 - DvMF_1626 0.77 -0.3
2,005,527 - -0.6
2,005,532 + -0.1
2,005,632 + -0.1
2,005,637 + -0.6
2,005,650 - -0.5
2,005,685 + DvMF_1627 0.10 -0.6
2,005,695 + DvMF_1627 0.11 -0.7
2,005,836 - DvMF_1627 0.20 -0.3
2,005,903 - DvMF_1627 0.24 -0.2
2,005,966 + DvMF_1627 0.28 -0.4
2,006,038 + DvMF_1627 0.32 -0.9
2,006,480 - DvMF_1627 0.59 -1.8
2,006,609 + DvMF_1627 0.67 -0.2
2,006,819 + DvMF_1627 0.80 -1.1
2,006,849 - DvMF_1627 0.82 -0.4
2,007,168 + -0.3
2,007,177 - -0.2
2,007,209 - -0.3
2,007,283 - DvMF_1628 0.13 -0.5
2,007,349 - DvMF_1628 0.19 -0.7
2,007,686 - DvMF_1628 0.48 -0.4
2,007,765 - DvMF_1628 0.55 -0.5
2,007,772 - DvMF_1628 0.55 -0.5
2,007,799 - DvMF_1628 0.58 -0.8
2,008,068 + DvMF_1628 0.81 -0.2

Or see this region's nucleotide sequence