Experiment: MoYLS4 with Nalidixic 0.0078125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1598 and DvMF_1599 are separated by 1 nucleotides DvMF_1599 and DvMF_1600 overlap by 4 nucleotides DvMF_1600 and DvMF_1601 overlap by 1 nucleotides DvMF_1601 and DvMF_1602 are separated by 10 nucleotides DvMF_1602 and DvMF_1603 overlap by 14 nucleotides
DvMF_1598: DvMF_1598 - 4Fe-4S ferredoxin iron-sulfur binding domain protein (RefSeq), at 1,969,948 to 1,970,571
_1598
DvMF_1599: DvMF_1599 - NADH-ubiquinone/plastoquinone oxidoreductase chain 6 (RefSeq), at 1,970,573 to 1,971,079
_1599
DvMF_1600: DvMF_1600 - NADH-ubiquinone oxidoreductase chain 4L (RefSeq), at 1,971,076 to 1,971,390
_1600
DvMF_1601: DvMF_1601 - putative monovalent cation/H+ antiporter subunit D (RefSeq), at 1,971,390 to 1,972,889
_1601
DvMF_1602: DvMF_1602 - hypothetical protein (RefSeq), at 1,972,900 to 1,973,157
_1602
DvMF_1603: DvMF_1603 - putative monovalent cation/H+ antiporter subunit D (RefSeq), at 1,973,144 to 1,974,928
_1603
Position (kb)
1971
1972
1973 Strain fitness (log2 ratio)
-1
0
1 at 1970.541 kb on - strand at 1970.588 kb on + strand at 1970.892 kb on - strand, within DvMF_1599 at 1971.037 kb on + strand at 1971.042 kb on + strand at 1971.344 kb on + strand, within DvMF_1600 at 1971.548 kb on - strand, within DvMF_1601 at 1971.742 kb on + strand, within DvMF_1601 at 1971.818 kb on - strand, within DvMF_1601 at 1971.959 kb on - strand, within DvMF_1601 at 1972.038 kb on + strand, within DvMF_1601 at 1972.046 kb on - strand, within DvMF_1601 at 1972.065 kb on + strand, within DvMF_1601 at 1972.230 kb on + strand, within DvMF_1601 at 1972.254 kb on - strand, within DvMF_1601 at 1972.316 kb on + strand, within DvMF_1601 at 1972.323 kb on + strand, within DvMF_1601 at 1972.392 kb on - strand, within DvMF_1601 at 1972.418 kb on - strand, within DvMF_1601 at 1972.525 kb on + strand, within DvMF_1601 at 1972.549 kb on + strand, within DvMF_1601 at 1972.640 kb on + strand, within DvMF_1601 at 1972.761 kb on + strand at 1972.968 kb on - strand, within DvMF_1602 at 1972.973 kb on - strand, within DvMF_1602 at 1973.042 kb on + strand, within DvMF_1602 at 1973.135 kb on - strand at 1973.140 kb on - strand at 1973.297 kb on - strand at 1973.308 kb on - strand at 1973.308 kb on - strand at 1973.323 kb on - strand, within DvMF_1603 at 1973.521 kb on - strand, within DvMF_1603 at 1973.554 kb on - strand, within DvMF_1603 at 1973.659 kb on - strand, within DvMF_1603
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Nalidixic 0.0078125 mg/ml remove 1,970,541 - -0.2 1,970,588 + -0.6 1,970,892 - DvMF_1599 0.63 -0.4 1,971,037 + -0.7 1,971,042 + -0.2 1,971,344 + DvMF_1600 0.85 +0.1 1,971,548 - DvMF_1601 0.11 -0.6 1,971,742 + DvMF_1601 0.23 -0.3 1,971,818 - DvMF_1601 0.29 -0.3 1,971,959 - DvMF_1601 0.38 -0.1 1,972,038 + DvMF_1601 0.43 -0.5 1,972,046 - DvMF_1601 0.44 -0.6 1,972,065 + DvMF_1601 0.45 -0.2 1,972,230 + DvMF_1601 0.56 -1.1 1,972,254 - DvMF_1601 0.58 -0.4 1,972,316 + DvMF_1601 0.62 +0.2 1,972,323 + DvMF_1601 0.62 -0.9 1,972,392 - DvMF_1601 0.67 -0.8 1,972,418 - DvMF_1601 0.69 -0.6 1,972,525 + DvMF_1601 0.76 -1.3 1,972,549 + DvMF_1601 0.77 +0.0 1,972,640 + DvMF_1601 0.83 -0.7 1,972,761 + +0.3 1,972,968 - DvMF_1602 0.26 -0.6 1,972,973 - DvMF_1602 0.28 -0.7 1,973,042 + DvMF_1602 0.55 +0.0 1,973,135 - -0.6 1,973,140 - -0.3 1,973,297 - -1.1 1,973,308 - -0.4 1,973,308 - -0.5 1,973,323 - DvMF_1603 0.10 -0.4 1,973,521 - DvMF_1603 0.21 -0.5 1,973,554 - DvMF_1603 0.23 -0.1 1,973,659 - DvMF_1603 0.29 -0.5
Or see this region's nucleotide sequence